ygbK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YgbK

Synonyms

conserved protein[1], B2737[2][1], YgbK[2][1] , ECK2732, JW2707, b2737

Product description

conserved protein[2][3]

Function unknown; regulated by FlhDC and FliA; mutants are not defective in motility or chemotraxis[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yifB

PMID:16606699[5]

Experiment(s):EBI-1143790

Protein

ygaF

PMID:16606699[5]

Experiment(s):EBI-1143790
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIKIGVIADD FTGATDIASF LVENGLPTVQ INGVPTGKMP EAIDALVISL KTRSCPVVEA
TQQSLAALSW LQQQGCKQIY FKYCSTFDST AKGNIGPVTD ALMDALDTPF TVFSPALPVN
GRTVYQGYLF VMNQLLAESG MRHHPVNPMT DSYLPRLVEA QSTGRCGVVS AHVFEQGVDA
VRQELARLQQ EGYRYAVLDA LTEHHLEIQG EALRDAPLVT GGSGLAIGLA RQWAQENGNQ
ARKAGRPLAG RGVVLSGSCS QMTNRQVAHY RQIAPAREVD VARCLSIETL AAYAHELAEW
VLGQESVLAP LVFATASTDA LAAIQQQYGA QKASQAVETL FSQLAARLAA EGVTRFIVAG
GETSGVVTQS LGIKGFHIGP TISPACRG
Length

388

Mol. Wt

41.337 kDa

pI

6.3 (calculated)

Extinction coefficient

31,400 - 32,275 (calc based on 10 Y, 3 W, and 7 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

161..380

PF07005 Protein of unknown function, DUF1537

PMID:19920124[6]

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Structure
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Structures

<beststructure> gene=ygbK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130644

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947199

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008988

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:Q46889

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7418

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13105

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947199

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003983

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2908

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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