yfjQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YfjQ

Synonyms

CP4-57 prophage; predicted protein[1], B2633[2][1], YfjQ[2][1] , ECK2629, JW2614, b2633

Product description

CP4-57 prophage; predicted protein[2][3]

Function unknown, CP4-57 putative defective prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1143558
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTRLASRFGA ANLIRRDRPL TREELFRVVP SVFSEDKHES RSERYTYIPT ISLLDSLQRE
GFQPFFACQT RVRDPRRREH TKHMLRLRRE GQITGKQVPE IILLNSHDGT SSYQMLPGMF
RAVCQNGLVC GESFGEVRVP HKGDVVSQVI EGAYEVLGIF ERVEEKRDAM QSLLLPPPVQ
QALAKAALTY RFGEDHQPVT ESQILSPRRW QDESNDLWTT YQRIQENLIK GGLSGRNAKG
GRTHTRAVRG IDGDVKLNRA LWVMAETLLT QLQ
Length

273

Mol. Wt

31.254 kDa

pI

9.8 (calculated)

Extinction coefficient

25,440 - 25,815 (calc based on 6 Y, 3 W, and 3 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

37..262

PF06067 Domain of unknown function (DUF932)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfjQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130551

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947127

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008673

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P52132

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7368

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13203

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947127

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003936

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2995

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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