yfjL:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfjL

Synonyms

CP4-57 prophage; predicted protein[1], B2628[2][1], YfjL[2][1] , ECK2624, JW2609, b2628

Product description

CP4-57 prophage; predicted protein[2][3]

Function unknown, CP4-57 putative defective prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

sdhA

PMID:16606699[5]

Experiment(s):EBI-1143546

Protein

phrB

PMID:16606699[5]

Experiment(s):EBI-1143546

Protein

alsA

PMID:16606699[5]

Experiment(s):EBI-1143546
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MESNDSGGVA AKHGFLFQDC VAAYHVTRML RDKTIRSVRC EVTDDIDIVS DGYIDFVQVK
STGKTRWNIS DIVQNSKGAD KKTIPCSSIL HKSMQCESDL SLGRRYSIVT EEKVNKTLEY
LTISPNARLD KPGRQELIDD LNKRTDNFLT DSGISVSDWI DAATWEVFSS LRELELLGIK
NIRLASQDLH GVILSSETVA EDIWCRILDT VTRKGEHSRR IHSADDKSYL RPDLLEWFKQ
RVEDDQSRSG RKIYVKRDLP HILTPFRAPM ASVCAKRKGQ VLHQQYSLKK YRYKHIADNV
CQWLDEVFLR PKEMSDIHKL TFIEKRERLK NSVFKSLHDV SEFLGRVLLH ATIRQHHESQ
PIPCMLYVEK AGAEKILENV HIVRRDPEGD QLWIGFSELV TDINIAVRLP EIRDQLYEDI
SDCIDTARKK ILDIKDDNYL LRHDIDEILD GSQPFDAHLD RFTFVLFVGY DSNLLTEPET
PGFEDDLEKE TAVLFEKFAA DLIEDSPFAN LCIHVFIYPA PSLERLTQLV DEKVREVV
Length

538

Mol. Wt

62.007 kDa

pI

5.8 (calculated)

Extinction coefficient

59,360 - 60,610 (calc based on 14 Y, 7 W, and 10 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

284..519

PF08878 Domain of unknown function (DUF1837)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfjL taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130546

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947110

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008650

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P52127

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7363

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13198

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947110

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003931

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2990

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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