yfjK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfjK

Synonyms

CP4-57 prophage; conserved protein[1], B2627[2][1], YfjK[2][1] , ECK2623, JW2608, b2627

Product description

CP4-57 prophage; conserved protein[2][3]

Function unknown, CP4-57 putative defective prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011545

F

Seeded from EcoCyc (v14.0)

complete

GO:0004386

helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001650

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011545

F

Seeded from EcoCyc (v14.0)

complete

GO:0008026

ATP-dependent helicase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011545

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dnaK

PMID:15690043[5]

Experiment(s):EBI-893852

Protein

gapA

PMID:15690043[5]

Experiment(s):EBI-893852

Protein

groL

PMID:15690043[5]

Experiment(s):EBI-893852

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-893852

Protein

rplL

PMID:15690043[5]

Experiment(s):EBI-893852

Protein

rplW

PMID:15690043[5]

Experiment(s):EBI-893852

Protein

tufA

PMID:15690043[5]

Experiment(s):EBI-893852

Protein

ppk

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

aceE

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

prs

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

narZ

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

rrmA

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

hchA

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

dnaE

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

alaS

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

lacZ

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

ydbH

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

pheT

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

ybhK

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

mrcA

PMID:16606699[6]

Experiment(s):EBI-1143531

Protein

rplW

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

groS

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

gapA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

groL

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rplL

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTEIYEQAKH SLQGEDFSSF NYLFAVNKLL SNPVSYDLGR DLIVRALDSR ERFSEHTTIL
KNMVRKSGLF PYLKKEFTSL TPDDLRVLEL YRTPFSDGYV FHSMQFHIFD LLKSGQNVVL
SAPTSMGKSA IVDSLLGMGT LKRLVLVVPT VALADETRRR LQERFGDRYQ IIHHSSQVCH
SDQAVYVLTQ ERVNERDDIV DIDLFVIDEF YKLAFRQLKS GDIDHQDERV IELNIALSKL
LKVSRQFYLT GPFVNSIRGL EKLGYPHTFV STDFNTVALD VKTFGIKAND DKAKLKALGE
IAHACVDATI IYCKSPTVAG LVARELIRLG HGTPTENPHV DWVSEEFDAD WDYTVALRNG
IGLHFGALPR ALQQYTADQF NAGKLRFLLC TSTIIEGVNT IAKNVVIYDN RDGTRSIDKF
THGNIKGRAG RMGVHFVGKI FCLEEIPEDN LNQEVDIPLG IQGIDTPINL LASVQPDHLS
EFSQDRFDEV FINDRVSIDL VKKHSYFRVE QFEMLQSMFE MMDDNEFSSL VFHWTPATNF
LKTFAKIIAR LVPHTFSRNG VPVKPTDVMI AKLAGYLSAE SYSEYLKNQI DYARQWISEG
EKRTLSIALN NDLKLITNTF GYTLPKVLSL MEDVVKHHAV KRGIRSKVDY THVKLAFESF
HLPPGVNALE EIGIPIQTLH RLVDLLEFSD EADVDELSQY LRDTQDIWSR SIGYVDQMFI
RRALGIRRH
Length

729

Mol. Wt

83.063 kDa

pI

6.4 (calculated)

Extinction coefficient

63,260 - 63,885 (calc based on 24 Y, 5 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

102..234

PF00270 DEAD/DEAH box helicase

PMID:19920124[8]

Domain

355..433

PF00271 Helicase conserved C-terminal domain

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfjK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130545

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947111

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008648

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P52126

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7362

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13197

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947111

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003930

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2989

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 7.4 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ 8.0 8.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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