yfiC:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfiC

Synonyms

predicted S-adenosyl-L-methionine-dependent methyltransferase[1], B2575[2][1], YfiC[2][1] , ECK2573, JW2559, b2575

Product description

predicted S-adenosyl-L-methionine-dependent methyltransferase[2][3]

Function unknown; putative SAM-dependent methyltransferase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003676

nucleic acid binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR002052

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01872

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0016430

tRNA (adenine-N6-)-methyltransferase activity

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_01872

F

Seeded from EcoCyc (v14.0)

complete

GO:0016430

tRNA (adenine-N6-)-methyltransferase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.1.1.55

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1143339

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1143339
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MWGADYRRYG CNLHLFVWIS LLGYCSHPVL SPFFLQGFIF MSQSTSVLRR NGFTFKQFFV
AHDRCAMKVG TDGILLGAWA PVAGVKRCLD IGAGSGLLAL MLAQRTDDSV MIDAVELESE
AAAQAQENIN QSPWAERINV HTADIQQWIT QQTVRFDLII SNPPYYQQGV ECSTPQREQA
RYTTTLDHPS LLTCAAECIT EEGFFCVVLP EQIGNGFTEL ALSMGWHLRL RTDVAENEAR
LPHRVLLAFS PQAGECFSDR LVIRGPDQNY SEAYTALTQA FYLFM
Length

285

Mol. Wt

32.007 kDa

pI

5.2 (calculated)

Extinction coefficient

46,410 - 47,535 (calc based on 9 Y, 6 W, and 9 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

30..192

PF05175 Methyltransferase small domain

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfiC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111461

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947047

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008473

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P31825

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11538

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11538

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947047

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001492

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1500

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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