yfhR:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfhR

Synonyms

predicted peptidase[1], B2534[2][1], YfhR[2][1] , ECK2531, JW2518, b2534

Product description

predicted peptidase[2][3]

Function unknown, S9 peptidase family[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006508

proteolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001375

P

Seeded from EcoCyc (v14.0)

complete

GO:0008236

serine-type peptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001375

F

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9904

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

prs

PMID:16606699[5]

Experiment(s):EBI-1143181

Protein

caiD

PMID:16606699[5]

Experiment(s):EBI-1143181

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1143181

Protein

dps

PMID:16606699[5]

Experiment(s):EBI-1143181

Protein

suhB

PMID:16606699[5]

Experiment(s):EBI-1143181
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MIKKSQGKVM ALPVNKRVPK ILFILFVVAF CVYLVPRVAI NFFYYPDDKI YGPDPWSAES
VEFTAKDGTR LQGWFIPSST GPADNAIATI IHAHGNAGNM SAHWPLVSWL PERNFNVFMF
DYRGFGKSKG TPSQAGLLDD TQSAINVVRH RSDVNPQRLV LFGQSIGGAN ILDVIGRGDR
EGIRAVILDS TFASYATIAN QMIPGSGYLL DESYSGENYI ASVSPIPLLL IHGKADHVIP
WQHSEKLYSL AKEPKRLILI PDGEHIDAFS DRHGDVYREQ MVDFILSALN PQN
Length

293

Mol. Wt

32.516 kDa

pI

7.0 (calculated)

Extinction coefficient

43,890 - 44,015 (calc based on 11 Y, 5 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

103..292

PF00326 Prolyl oligopeptidase family

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfhR taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:226524738

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945059

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008340

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77538

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7328

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13453

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945059

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003900

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3226

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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