yffS:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YffS

Synonyms

CPZ-55 prophage; predicted protein[1], B2450[2][1], YffS[2][1] , ECK2445, b2450

Product description

CPZ-55 prophage; predicted protein[2][3]

Function unknown, Eut/CPZ-55 prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

gyrA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

accA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsK

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsF

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsJ

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

hns

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

gldA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

polA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

malP

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yegV

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpoB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yddW

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MDSMRWEIKI MSYEIKICDI LKGAAMEGQY KGAQRGAKCE EIANELTRRG VKNNKGEVIT
KGGVSHWLEG RREPNFDTLA ELCDMFGVYA LMPMRGGKWI RVHPEDRGEM ELREAVAERD
AIIDDLKARI AELEAALANK QVPAEAEEMG GEKVEEVAAE QAPNDEKEMG AKEWVNPNPK
KYSVGMLCQV LAAMGGEYLG NNAGLQQKIT VLDNDGNRKP ISNGAFYRLI EQAKGRGLIS
VEQEIKHKKD ENGNQIGKGK KGDKLITLLP NWIDKLGDE
Length

279

Mol. Wt

31.041 kDa

pI

5.3 (calculated)

Extinction coefficient

36,440 - 36,940 (calc based on 6 Y, 5 W, and 4 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yffS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698298

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946932

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008077

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76550

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7280

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14180

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946932

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003854

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3932

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed

Categories

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