yfeW:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfeW

Synonyms

predicted periplasmic esterase[1], B2430[2][1], YfeW[2][1] , ECK2425, JW5395, pbp4B, b2430

Product description

predicted periplasmic esterase[2][3]

Novel penicillin binding protein PBP4B; putative periplasmic esterase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

lsrC

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLAGFWWHGF AGLFSPRSLA AVTSIWTDIM KRTMLYLSLL AVSCSVSAAK YPVLTESSPE
KAGFNVERLN QMDRWISQQV DVGYPSVNLL IIKDNQIVYR KAWGAAKKYD GSVLMEQPVK
ATTGTLYDLA SNTKMYATNF ALQKLMSEGK LHPDDRIAKY IPGFADSPND TIKGKNTLRI
SDLLHHSGGF PADPQYPNKA VAGALYSQDK GQTLEMIKRT PLEYQPGSKH IYSDVDYMLL
GFIVESVTGQ PLDRYVEESI YRPLGLTHTV FNPLLKGFKP QQIAATELNG NTRDGVIHFP
NIRTSTLWGQ VHDEKAFYSM GGVSGHAGLF SNTGDIAVLM QTMLNGGGYG DVQLFNAETV
KMFTTSSKED ATFGLGWRVN GNATMTPTFG TLASPQTYGH TGWTGTVTVI DPVNHMTIVM
LSNKPHSPVA DPQKNPNMFE SGQLPIATYG WVVDQVYAAL KQK
Length

463

Mol. Wt

50.973 kDa

pI

8.3 (calculated)

Extinction coefficient

79,300 - 79,425 (calc based on 20 Y, 9 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-19

UniProt Manual:Signal Peptides

UniProt:P77619

Domain

43..414

PF00144 Beta-lactamase

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfeW taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111432

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946907

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008012

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77619

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7265

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14164

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946907

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003839

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3916

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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