yfdQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfdQ

Synonyms

CPS-53 (KpLE1) prophage; predicted protein[1], B2360[2][1], YfdQ[2][1] , ECK2354, JW2357, b2360

Product description

hypothetical protein[2]; CPS-53 (KpLE1) prophage; predicted protein[3]

Function unknown, CPS-53/KpLE1 prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rob

PMID:16606699[5]

Experiment(s):EBI-1142635

Protein

glpK

PMID:16606699[5]

Experiment(s):EBI-1142635
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSQNLDATAI NQIHALISAQ GVNEIISKIG ADAVALPENF RIHDLEKFNL NRFRFRGALS
TASIDDFTRY SKDLADEGTR CFIDADNMRA VSVLNLGTID EPGHADNTAT LKLKKTAPFS
ALLSVNGERN SQKSLAEWIE DWADYLVGFD ANGDAIQATK AAAAIRKITI EANQTADFED
NDFSGKRSLM ESVEAKTKDI MPVAFEFKCV PFEGLKERPF KLRLSIITGD RPVLVLRIIQ
LEAVQEDMAN EFRDLLVEKF KDSKVETFIG TFTA
Length

274

Mol. Wt

30.443 kDa

pI

4.8 (calculated)

Extinction coefficient

13,980 - 14,230 (calc based on 2 Y, 2 W, and 2 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

1..273

PF10065 Uncharacterized conserved protein (DUF2303)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfdQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130292

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946827

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007788

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76513

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7229

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14139

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946827

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003804

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3891

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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