yfcZ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfcZ

Synonyms

conserved protein[1], B2343[2][1], YfcZ[2][1] , ECK2337, JW2340, b2343

Product description

conserved hypothetical protein[2]; conserved protein[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1142614

Protein

glcB

PMID:16606699[5]

Experiment(s):EBI-1142614

Protein

pflB

PMID:16606699[5]

Experiment(s):EBI-1142614

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1142614

Protein

rplP

PMID:16606699[5]

Experiment(s):EBI-1142614

Protein

ulaF

PMID:16606699[5]

Experiment(s):EBI-1142614

Protein

rpmB

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yfcL

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

sixA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yfiD

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

pflB

PMID:19402753[6]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MHIQRKSTMS KCSADETPVC CCMDVGTIMD NSDCTASYSR VFANRAEAEQ TLAALTEKAR
SVESEPCKIT PTFTEESDGV RLDIDFTFAC EAEMLIFQLG LR
Length

102

Mol. Wt

11.299 kDa

pI

4.5 (calculated)

Extinction coefficient

1,490 - 2,365 (calc based on 1 Y, 0 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

15..94

PF04175 Protein of unknown function (DUF406)

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfcZ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111421

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948817

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007731

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AD33

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7214

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14129

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948817

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003789

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3881

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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