yfcU:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfcU

Synonyms

predicted export usher protein[1], B2338[2][1], YfcU[2][1] , ECK2332, JW2334, yfcT, b4661

Product description

putative outer membrane protein[2]; predicted export usher protein[3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000015

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000015

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0009279

cell outer membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0998

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000015

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplD

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

ybcQ

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

dnaJ

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

ibpA

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

pepD

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

uspG

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

yraN

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

nadE

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

ykgF

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

rplN

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

glpK

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

ibpB

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

tatE

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

manB

PMID:16606699[4]

Experiment(s):EBI-1142588

Protein

yeeT

PMID:16606699[4]

Experiment(s):EBI-1142588
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPDHSLFRLR ILPWCIALAM SGSYSSVWAE DDIQFDSRFL ELKGDTKIDL KRFSSQGYVE
PGKYNLQVQL NKQPLAEEYD IYWYAGEDDV SKSYACLTPE LVAQFGLKED VAKNLQWSHD
GKCLKPGQLE GVEIKADLSQ SALVISLPQA YLEYTWPDWD PPSRWDDGIS GIIADYSITA
QTRHEENGGD DSNEISGNGT VGVNLGPWRM RADWQTNYQH TRSNDDDDEF GGDDTQKKWE
WSRYYAWRAL PSLKAKLALG EDYLNSDIFD GFNYVGGSVS TDDQMLPPNL RGYAPDISGV
AHTTAKVTVS QMGRVIYETQ VPAGPFRIQD LGDSVSGTLH IRIEEQNGQV QEYDISTASM
PYLTRPGQVR YKIMMGRPQE WGHHVEGGFF SGAEASWGIA NGWSLYGGAL GDENYQSAAL
GVGRDLSTFG AVAFDVTHSH TKLDKDTAYG KGSLDGNSFR VSYSKDFDQL NSRVTFAGYR
FSEENFMTMS EYLDASDSEM VRTGNDKEMY TATYNQNFRD AGVSVYLNYT RHTYWDREEQ
TNYNIMLSHY FNMGSIRNMS VSLTGYRYEY DNRADKGM
Length

578

Mol. Wt

65.302 kDa

pI

4.6 (calculated)

Extinction coefficient

141,640 - 142,015 (calc based on 36 Y, 16 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-29

UniProt Manual:Signal Peptides

UniProt:P77196


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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfcU taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

ASAP

ASAP:ABE-0007713

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:1450268

Escherichia coli str. K-12 substr. MG1655

ASAP (EcoliWiki Page)

[https://asap.ahabs.wisc.edu/asap/feature_info.php?FeatureID=ABE-0007713 ASAP:ABE-0007713]

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77196

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14124

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:1450268

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7209

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003784

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4380

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.00 4.01 4.02 4.03 4.04 4.05 4.06 4.07 4.08 4.09 4.10 4.11 4.12 4.13 4.14 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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