yfcO:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfcO

Synonyms

predicted protein[1], B2332[2][1], YfcO[2][1] , ECK2326, JW2329, b2332

Product description

predicted protein[2][3]

Putative exported protein, function unknown[4]

EC number (for enzymes)


<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MSIFKMKILR WLFALVMLIA TTEAMAAGHS VDVYYGYNGD SRNIATFNLK IMMPSAVYVG
EYKSSQWLMT GEILQNVSWS GPPPAPSVKL IGYHQNINKA SCPGLPSGWN CGYYTFEVIV
SAEIESYFSC PWLVIMNDSE ASPGGVTYQG PDSHDTICPS VSVQPYDVSW NENYVSKSKL
LTLQSTGGVV EKTLSTYLMK DGKLCDSTQM NETGGYCRWV AQMITFTASG CDKAEVSVTP
NRHPITDKQL HDMVVRVDTS SMQPIDSTCR FQYILNEL
Length

278

Mol. Wt

30.866 kDa

pI

5.4 (calculated)

Extinction coefficient

60,850 - 61,850 (calc based on 15 Y, 7 W, and 8 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-21

UniProt Manual:Signal Peptides

UniProt:P76498

Domain

42..273

PF11245 Protein of unknown function (DUF2544)

PMID:19920124[5]

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfcO taxon=562,83333 </beststructure>

Models

View models at:

</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111420

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946620

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007700

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76498

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7203

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14118

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946620

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003778

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3871

Escherichia coli str. K-12 substr. MG1655

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]