yfaY:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfaY

Synonyms

conserved protein[1], YfaY[2][1], B2249[2][1] , cinA, ECK2242, JW2243, b2249

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006777

Mo-molybdopterin cofactor biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001453

P

Seeded from EcoCyc (v14.0)

complete

GO:0006777

Mo-molybdopterin cofactor biosynthetic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR020817

P

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

dacA

PMID:16606699[5]

Experiment(s):EBI-1142331

Protein

accD

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

yeiT

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

yfbN

PMID:19402753[6]

LCMS(ID Probability):99.3

Protein

entF

PMID:19402753[6]

LCMS(ID Probability):99.0

Protein

galF

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):34.299260

Protein

gatD

PMID:19402753[6]

LCMS(ID Probability):99.6 MALDI(Z-score):35.871820

Protein

fmt

PMID:19402753[6]

LCMS(ID Probability):99.4

Protein

emrA

PMID:19402753[6]

LCMS(ID Probability):99.6

Protein

galU

PMID:19402753[6]

MALDI(Z-score):36.264075

edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLKVEMLSTG DEVLHGQIVD TNAAWLADFF FHQGLPLSRR NTVGDNLDDL VTILRERSQH
ADVLIVNGGL GPTSDDLSAL AAATAKGEGL VLHEAWLKEM ERYFHERGRV MAPSNRKQAE
LPASAEFINN PVGTACGFAV QLNRCLMFFT PGVPSEFKVM VEHEILPRLR ERFSLPQPPV
CLRLTTFGRS ESDLAQSLDT LQLPPGVTMG YRSSMPIIEL KLTGPASEQQ AMEKLWLDVK
RVAGQSVIFE GTEGLPAQIS RELQNRQFSL TLSEQFTGGL LALQLSRAGA PLLACEVVPS
QEETLAQTAH WITERRANHF AGLALAVSGF ENEHLNFALA TPDGTFALRV RFSTTRYSLA
IRQEVCAMMA LNMLRRWLNG QDIASEHGWI EVVESMTLSV
Length

400

Mol. Wt

44.225 kDa

pI

5.6 (calculated)

Extinction coefficient

37,470 - 38,095 (calc based on 3 Y, 6 W, and 5 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

5..171

PF00994 Probable molybdopterin binding domain

PMID:19920124[7]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfaY taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130184

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945478

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007441

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77808

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7162

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14087

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945478

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003738

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3840

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yfaY:Gene_Product(s)&oldid=1494133"