yfaL:Gene Product(s)
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YfaL |
|---|---|
| Synonyms |
adhesin[1], B2233[2][1], YfaJ[2][1], YfaK[2][1], YfaF[2][1], YfaL[2][1] , ECK2225, JW2227, yfaF, yfaJ, yfaK, b2233 |
| Product description |
Probable OM autotransporter adhesin, function unknown; overexpression increases adhesion and biofilm formation[4] |
| EC number (for enzymes) |
|
| edit table |
<protect></protect>
Notes
Function
<protect>
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0019867 |
outer membrane |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
metL |
Experiment(s):EBI-1142273 | ||
|
Protein |
alaS |
Experiment(s):EBI-1142273 | ||
|
Protein |
clpB |
Experiment(s):EBI-1142273 | ||
|
Protein |
mukB |
Experiment(s):EBI-1142273 | ||
|
Protein |
rpsB |
Experiment(s):EBI-1142273 | ||
|
Protein |
rplF |
Experiment(s):EBI-1142273 | ||
| edit table |
</protect>
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
<protect></protect>
Notes
Structure and Physical Properties
<protect>
Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MRIIFLRKEY LSLLPSMIAS LFSANGVAAV TDSCQGYDVK ASCQASRQSL SGITQDWSIA DGQWLVFSDM TNNASGGAVF LQQGAEFSLL PENETGMTLF ANNTVTGEYN NGGAIFAKEN STLNLTDVIF SGNVAGGYGG AIYSSGTNDT GAVDLRVTNA MFRNNIANDG KGGAIYTINN DVYLSDVIFD NNQAYTSTSY SDGDGGAIDV TDNNSDSKHP SGYTIVNNTA FTNNTAEGYG GAIYTNSVTA PYLIDISVDD SYSQNGGVLV DENNSAAGYG DGPSSAAGGF MYLGLSEVTF DIADGKTLVI GNTENDGAVD SIAGTGLITK TGSGDLVLNA DNNDFTGEMQ IENGEVTLGR SNSLMNVGDT HCQDDPQDCY GLTIGSIDQY QNQAELNVGS TQQTFVHALT GFQNGTLNID AGGNVTVNQG SFAGIIEGAG QLTIAQNGSY VLAGAQSMAL TGDIVVDDGA VLSLEGDAAD LTALQDDPQS IVLNGGVLDL SDFSTWQSGT SYNDGLEVSG SSGTVIGSQD VVDLAGGDNL HIGGDGKDGV YVVVDASDGQ VSLANNNSYL GTTQIASGTL MVSDNSQLGD THYNRQVIFT DKQQESVMEI TSDVDTRSDA AGHGRDIEMR ADGEVAVDAG VDTQWGALMA DSSGQHQDEG STLTKTGAGT LELTASGTTQ SAVRVEEGTL KGDVADILPY ASSLWVGDGA TFVTGADQDI QSIDAISSGT IDISDGTVLR LTGQDTSVAL NASLFNGDGT LVNATDGVTL TGELNTNLET DSLTYLSNVT VNGNLTNTSG AVSLQNGVAG DTLTVNGDYT GGGTLLLDSE LNGDDSVSDQ LVMNGNTAGN TTVVVNSITG IGEPTSTGIK VVDFAADPTQ FQNNAQFSLA GSGYVNMGAY DYTLVEDNND WYLRSQEVTP PSPPDPDPTP DPDPTPDPDP TPDPEPTPAY QPVLNAKVGG YLNNLRAANQ AFMMERRDHA GGDGQTLNLR VIGGDYHYTA AGQLAQHEDT STVQLSGDLF SGRWGTDGEW MLGIVGGYSD NQGDSRSNMT GTRADNQNHG YAVGLTSSWF QHGNQKQGAW LDSWLQYAWF SNDVSEQEDG TDHYHSSGII ASLEAGYQWL PGRGVVIEPQ AQVIYQGVQQ DDFTAANRAR VSQSQGDDIQ TRLGLHSEWR TAVHVIPTLD LNYYHDPHST EIEEDGSTIS DDAVKQRGEI KVGVTGNISQ RVSLRGSVAW QKGSDDFAQT AGFLSMTVKW |
| Length |
1,250 |
| Mol. Wt |
131.151 kDa |
| pI |
3.8 (calculated) |
| Extinction coefficient |
150,580 - 151,080 (calc based on 42 Y, 16 W, and 4 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
| </protect>
Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
<protect></protect>
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
<protect></protect>
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ 6.0 6.1 6.2 6.3 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
Categories
