yfaA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YfaA

Synonyms

predicted protein[1], B2230[2][1], PufY[2][1], YfaA[2][1] , ECK2222, JW2224, pufY, b2230

Product description

predicted protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1142246

Protein

sdhA

PMID:16606699[5]

Experiment(s):EBI-1142246

Protein

ybcK

PMID:16606699[5]

Experiment(s):EBI-1142246

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1142246

Protein

gltD

PMID:16606699[5]

Experiment(s):EBI-1142246
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAVPVKNGWL YTRNVAMSGE KKAKGWRFYG LVGFGAIALL SAGVWALQYA GSGPEKTLSP
LVVHNNLQID LNEPDLFLDS DSLSQLPKDL LTIPFLHDVL SEDFVFYYQN HADRLGIEGS
IRRIVYEHDL TLKDKLFSSL LDQPAQAALW HDKQGHLSHY MVLIQRSGLS KLLEPLLFAA
TSDSQLSKTE ISSIKINSET VPVYQLRYNG NNALMFATYQ DKMLVFSSTD MLFKDDQQDT
EATAIAGDLL SGKKRWQASF GLEERTAEKT PVRQRIVVSA RWLGFGYQRL MPSFAGVRFE
MGNDGWHSFV ALNDESASVD ASFDFTPVWN SMPAGASFCV AVPYSHGIAE EMLSHISQEN
DKLNGALDGA AGLCWYEDSK LQTPLFVGQF DGTAEQAQLP GKLFTQNIGA HESKAPEGVL
PVSQTQQGEA QIWRREVSSR YGQYPKAQAA QPDQLMSDYF FRVSLAMQNK TLLFSLDDTL
VNNALQTLNK TRPAMVDVIP TDGIVPLYIN PQGIAKLLRN ETLTSLPKNL EPVFYNAAQT
LLMPKLDALS QQPRYVMKLA QMEPGAAWQW LPITWQPL
Length

578

Mol. Wt

64.473 kDa

pI

5.6 (calculated)

Extinction coefficient

99,810 - 100,060 (calc based on 19 Y, 13 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

8..559

PF09909 Uncharacterized protein conserved in bacteria (DUF2138)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yfaA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111405

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946618

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007368

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P17994

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11142

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11142

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946618

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001126

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1132

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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