yejO:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YejO

Synonyms

predicted autotransporter outer membrane protein[1], YejO[2][1], B2190[2][1] , ECK2184, JW5839, b2190

Product description

predicted autotransporter outer membrane protein[2][3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0007155

cell adhesion

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003991

P

Seeded from EcoCyc (v14.0)

complete

GO:0009279

cell outer membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0998

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0019867

outer membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006315

C

Seeded from EcoCyc (v14.0)

complete

GO:0019898

extrinsic to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9903

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MASTVEYGET VDGVVLEKDI QLVYGTANNT KINPGGEQHI KEFGVSNNTE INGGYQYIEM
NGAAEYSVLN DGYQIVQMGG AANQTTLNNG VLQVYGAAND TTIKGGRLIV EKDGGAVFVA
IEKGGLLEVK EGGFAFAVDQ KAGGAIKTTT RAMEVFGTNR LGQFDIKNGI ANNMLLENGG
SLRVEENDFA YNTTVDSGGL LEVMDGGTVT GVDKKAGGKL IVSTNALEVS GPNSKGQFSI
KDGVSKNYEL DDGSGLIVME DTQAIDTILD KHATMQSLGK DTGTKVQANA VYDLGRSYQN
GSITYSSKAI SENMVINNGR ANVWAGTMVN VSVRGNDGIL EVMKPQINYA PAMLVGKVVV
SEGASFRTHG AVDTSKADVS LENSVWTIIA DITTTNQNTL LNLANLAMSD ANVIMMDEPV
TRSSVTASAE NFITLTTNTL SGNGNFYMRT DMANHQSDQL NVTGQATGDF KIFVTDTGAS
PAAGDSLTLV TTGGGDAAFT LGNAGGVVDI GTYEYTLLDN GNHSWSLAEN RAQITPSTTD
VLNMAAAQPL VFDAELDTVR ERLGSVKGVS YDTAMWSSAI NTRNNVTTDA GAGFEQTLTG
LTLGIDSRFS REESSTIRGL IFGYSHSDIG FDRGGKGNID SYTLGAYAGW EHQNGAYVDG
VVKVDRFANT IHGKMSNGAT AFGDYNSNGA GAHVESGFRW VDGLWSVRPY LAFTGFTTDG
QDYTLSNGMR ADVGNTRILR AEAGTAVSYH MDLQNGTTLE PWLKAAVRQE YADSNQVKVN
DDGKFNNDVA GTSGVYQAGI RSSFTPTLSG HLSVSYGNGA GVESPWNTQA GVVWTF
Length

836

Mol. Wt

88.475 kDa

pI

4.5 (calculated)

Extinction coefficient

96,720 (calc based on 28 Y, 10 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

596..849

PF03797 Autotransporter beta-domain

PMID:19920124[4]

Domain

430..556

PF03212 Pertactin

PMID:19920124[4]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yejO taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

ASAP

ASAP:ABE-0007244

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946867

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P33924

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12051

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12051

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946867

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001964

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1982

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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