yejF:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YejF

Synonyms

fused predicted oligopeptide transporter subunits of ABC superfamilly: ATP-binding components[1], B2180[2][1], YejF[2][1] , ECK2174, JW2168, b2180

Product description

YejF[2][3];

Component of YejA/YejB/YejE/YejF ABC transporter[2][3]

ABC transporter ATP-binding protein for microcin C uptake; regulated by rydC sRNA[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013563

F

Seeded from EcoCyc (v14.0)

complete

GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013563

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003439

F

Seeded from EcoCyc (v14.0)

complete

GO:0016887

ATPase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR017871

F

Seeded from EcoCyc (v14.0)

complete

GO:0017111

nucleoside-triphosphatase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003593

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of YejA/YejB/YejE/YejF ABC transporter

could be indirect

Protein

lpdA

PMID:15690043[5]

Experiment(s):EBI-881026

Protein

tufA

PMID:15690043[5]

Experiment(s):EBI-881026

Protein

dnaE

PMID:15690043[5]

Experiment(s):EBI-887757

Protein

oppD

PMID:15690043[5]

Experiment(s):EBI-887757

Protein

rplC

PMID:15690043[5]

Experiment(s):EBI-887757

Protein

yfcB

PMID:15690043[5]

Experiment(s):EBI-887757

Protein

cheA

PMID:16606699[6]

Experiment(s):EBI-1142121

Protein

glpK

PMID:16606699[6]

Experiment(s):EBI-1142121

Protein

topB

PMID:16606699[6]

Experiment(s):EBI-1142121

Protein

dnaK

PMID:16606699[6]

Experiment(s):EBI-1142121

Protein

dnaE

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

prmB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

oppD

PMID:19402753[7]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

cytoplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTQTLLAIEN LSVGFRHQQT VRTVVNDVSL QIEAGETLAL VGESGSGKSV TALSILRLLP
SPPVEYLSGD IRFHGESLLH ASDQTLRGVR GNKIAMIFQE PMVSLNPLHT LEKQLYEVLS
LHRGMRREAA RGEILNCLDR VGIRQAAKRL TDYPHQLSGG ERQRVMIAMA LLTRPELLIA
DEPTTALDVS VQAQILQLLR ELQGELNMGM LFITHNLSIV RKLAHRVAVM QNGRCVEQNY
AATLFASPTH PYTQKLLNSE PSGDPVPLPE PASTLLDVEQ LQVAFPIRKG ILKRIVDHNV
VVKNISFTLR AGETLGLVGE SGSGKSTTGL ALLRLINSQG SIIFDGQPLQ NLNRRQLLPI
RHRIQVVFQD PNSSLNPRLN VLQIIEEGLR VHQPTLSAAQ REQQVIAVMH EVGLDPETRH
RYPAEFSGGQ RQRIAIARAL ILKPSLIILD EPTSSLDKTV QAQILTLLKS LQQKHQLAYL
FISHDLHVVR ALCHQVIILR QGEVVEQGPC ARVFATPQQE YTRQLLALS
Length

529

Mol. Wt

58.726 kDa

pI

9.3 (calculated)

Extinction coefficient

11,920 - 12,420 (calc based on 8 Y, 0 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

51..185

PF00005 ABC transporter

PMID:19920124[8]

Domain

326..454

PF00005 ABC transporter

PMID:19920124[8]

Domain

236..280

PF08352 Oligopeptide/dipeptide transporter, C-terminal region

PMID:19920124[8]

Domain

505..529

PF08352 Oligopeptide/dipeptide transporter, C-terminal region

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yejF taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130118

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946689

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007212

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P33916

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12041

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12041

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946689

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001957

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1975

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.0 7.1 7.2 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ 8.0 8.1 8.2 8.3 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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