yejA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YejA

Synonyms

predicted oligopeptide transporter subunit[1], periplasmic-binding component of ABC superfamily[1], B2177[2][1], YejA[2][1] , ECK2171, JW2165, b2177

Product description

YejA[2][3];

Component of YejA/YejB/YejE/YejF ABC transporter[2][3]

ABC transporter periplasmic binding protein for microcin C; regulated by rydC sRNA[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000914

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Subunits of YejA/YejB/YejE/YejF ABC transporter

could be indirect

Protein

secA

PMID:16606699[5]

Experiment(s):EBI-1142117

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1142117
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

periplasm

From EcoCyc[3]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MQMIVRILLL FIALFTFGVQ AQAIKESYAF AVLGEPRYAF NFNHFDYVNP AAPKGGQITL
SALGTFDNFN RYALRGNPGA RTEQLYDTLF TTSDDEPGSY YPLIAESARY ADDYSWVEVA
INPRARFHDG SPITARDVEF TFQKFMTEGV PQFRLVYKGT TVKAIAPLTV RIELAKPGKE
DMLSLFSLPV FPEKYWKDHK LSDPLATPPL ASGPYRVTSW KMGQNIVYSR VKDYWAANLP
VNRGRWNFDT IRYDYYLDDN VAFEAFKAGA FDLRMENDAK NWATRYTGKN FDKKYIIKDE
QKNESAQDTR WLAFNIQRPV FSDRRVREAI TLAFDFEWMN KALFYNAWSR TNSYFQNTEY
AARNYPDAAE LVLLAPMKKD LPSEVFTQIY QPPVSKGDGY DRDNLLKADK LLNEAGWVLK
GQQRVNATTG QPLSFELLLP ASSNSQWVLP FQHSLQRLGI NMDIRKVDNS QITNRMRSRD
YDMMPRVWRA MPWPSSDLQI SWSSEYINST YNAPGVQSPV IDSLINQIIA AQGNKEKLLP
LGRALDRVLT WNYYMLPMWY MAEDRLAWWD KFSQPAVRPI YSLGIDTWWY DVNKAAKLPS
ASKQGE
Length

606

Mol. Wt

69.93 kDa

pI

9.1 (calculated)

Extinction coefficient

159,170 (calc based on 33 Y, 20 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-19

UniProt Manual:Signal Peptides

UniProt:P33913

Domain

97..508

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yejA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111401

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946675

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007206

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P33913

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12037

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12037

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946675

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001954

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1972

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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