yehB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YehB

Synonyms

predicted outer membrane protein[1], B2109[2][1], YehB[2][1] , ECK2102, JW2096, b2109

Product description

putative outer membrane protein[2][3]

Putative outer membrane fimbrial subunit export usher protein; function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000015

F

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000015

P

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0009279

cell outer membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0998

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000015

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

GO:0006974

response to DNA damage stimulus

PMID:11967071[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLRMTPLASA IVALLLGIEA YAAEETFDTH FMIGGMKDQQ VANIRLDDNQ PLPGQYDIDI
YVNKQWRGKY EIIVKDNPQE TCLSREVIKR LGINSDNFAS GKQCLTFEQL VQGGSYTWDI
GVFRLDFSVP QAWVEELESG YVPPENWERG INAFYTSYYL SQYYSDYKAS GNNKSTYVRF
NSGLNLLGWQ LHSDASFSKT NNNPGVWKSN TLYLERGFAQ LLGTLRVGDM YTSSDIFDSV
RFRGVRLFRD MQMLPNSKQN FTPRVQGIAQ SNALVTIEQN GFVVYQKEVP PGPFAITDLQ
LAGGGADLDV SVKEADGSVT TYLVPYAAVP NMLQPGVSKY DLAAGRSHIE GASKQSDFVQ
AGYQYGFNNL LTLYGGSMVA NNYYAFTLGA GWNTRIGAIS VDATKSHSKQ DNGDVFDGQS
YQIAYNKFVS QTSTRFGLAA WRYSSRDYRT FNDHVWANNK DNYRRDENDV YDIADYYQND
FGRKNSFSAN MSQSLPEGWG SVSLSTLWRD YWGRSGSSKD YQLSYSNNLR RISYTLAASQ
AYDENHHEEK RFNIFISIPF DWGDDVSTPR RQIYMSNSTT FDDQGFASNN TGLSGTVGSR
DQFNYGVNLS HQHQGNETTA GANLTWNAPV ATVNGSYSQS STYRQAGASV SGGIVAWSGG
VNLANRLSET FAVMNAPGIK DAYVNGQKYR TTNRNGVVIY DGMTPYRENH LMLDVSQSDS
EAELRGNRKI AAPYRGAVVL VNFDTDQRKP WFIKALRADG QSLTFGYEVN DIHGHNIGVV
GQGSQLFIRT NEVPPSVNVA IDKQQGLSCT ITFGKEIDES RNYICQ
Length

826

Mol. Wt

92.282 kDa

pI

5.9 (calculated)

Extinction coefficient

159,520 - 160,020 (calc based on 48 Y, 16 W, and 4 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-22

UniProt Manual:Signal Peptides

UniProt:P33341

Domain

25..816

PF00577 Fimbrial Usher protein

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yehB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130047

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946617

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006974

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P33341

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11988

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11988

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946617

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001913

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1931

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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