yegD:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YegD

Synonyms

predicted chaperone[1], B2069[2][1], YegD[2][1] , ECK2063, JW2054, b2069

Product description

actin family protein[2][3]

Putatitve DnaK-like chaperone, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000166

nucleotide binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001023

F

Seeded from EcoCyc (v14.0)

complete

GO:0005524

ATP binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rpoA

PMID:16606699[5]

Experiment(s):EBI-1141855

Protein

rpoC

PMID:16606699[5]

Experiment(s):EBI-1141855

Protein

baeS

PMID:16606699[5]

Experiment(s):EBI-1141855

Protein

paaB

PMID:16606699[5]

Experiment(s):EBI-1141855

Protein

rpoB

PMID:16606699[5]

Experiment(s):EBI-1141855
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSRRQHFAKV TPLLHRHGDY FVFIGFDYGT ANCSVAVMRD GKPHLLKMEN DSTLLPSMLC
APTREAVSEW LYRHHDVPAD DDETQALLRR AIRYNREEDI DVTAKSVQFG LSSLAQYIDD
PEEVWFVKSP KSFLGASGLK PQQVALFEDL VCAMMLHIRQ QAQAQLPEAI TQAVIGRPIN
FQGLGGDEAN TQAQGILERA AKRAGFRDVV FQYEPVAAGL DYEATLQEEK RVLVVDIGGG
TTDCSLLLMG PQWRSRLDRE ASLLGHSGCR IGGNDLDIAL AFKNLMPLLG MGGETEKGIA
LPILPWWNAV AINDVPAQSD FYSSANGRLL NDLVRDAREP EKVALLQKVW RQRLSYRLVR
SAEECKIALS SVAETRASLP FISNELATLI SQRGLESALS QPLTRILEQV QLALDNAQEK
PDVIYLTGGS ARSPLIKKAL AEQLPGIPIA GGDDFGSVTA GLARWAEVVF R
Length

471

Mol. Wt

51.919 kDa

pI

5.6 (calculated)

Extinction coefficient

53,400 - 54,150 (calc based on 10 Y, 7 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

2..259

PF00012 Hsp70 protein

PMID:19920124[6]

Domain

305..448

PF00012 Hsp70 protein

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yegD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111380

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947234

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006856

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P36928

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12200

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12200

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947234

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002088

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2116

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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