yeeX:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YeeX

Synonyms

conserved protein[1], YeeX[2][1], B2007[2][1] , ECK2001, JW1989, b2007

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

tig

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rfaD

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):38.705543

Protein

rplN

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplJ

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpmG

PMID:19402753[5]

LCMS(ID Probability):99.5

Protein

secA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpmC

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsT

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsJ

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):25.898492

Protein

rpmB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):6.253198

Protein

rpsM

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):21.106052

Protein

rpsA

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):15.474095

Protein

rplE

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):21.304559

Protein

hupB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsF

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplU

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplS

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):20.409675

Protein

rplX

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):18.483955

Protein

rpsI

PMID:19402753[5]

LCMS(ID Probability):99.4

Protein

rpsK

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):3.795438

Protein

rpsD

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):35.161132

Protein

rplB

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):32.180897

Protein

rplT

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplM

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):13.198885

Protein

rpoB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplR

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

accA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsH

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):31.420320

Protein

rplO

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):16.325900

Protein

rpsC

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):19.872659

Protein

rpsS

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

lon

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):28.008480

Protein

rpsR

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):7.627877

Protein

rplF

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsO

PMID:19402753[5]

LCMS(ID Probability):99.5

Protein

pdxH

PMID:19402753[5]

LCMS(ID Probability):99.2

Protein

rplQ

PMID:19402753[5]

LCMS(ID Probability):99.1 MALDI(Z-score):4.774822

Protein

rpmA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rlmL

PMID:19402753[5]

LCMS(ID Probability):98.0 MALDI(Z-score):8.389847

Protein

rplW

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpoC

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

ihfA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

malP

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

srmB

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):21.472980

Protein

rpoA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yhiR

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsU

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):7.967277

Protein

fadI

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

skp

PMID:19402753[5]

LCMS(ID Probability):99.0

Protein

ycaO

PMID:19402753[5]

MALDI(Z-score):27.663915

Protein

hrpA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yfiF

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):5.034632

Protein

lpxD

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

infC

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yibL

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

pssA

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):25.011184

Protein

norV

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rnr

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):9.377997

Protein

rsuA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

spoT

PMID:19402753[5]

MALDI(Z-score):26.807712

Protein

rimP

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yadE

PMID:19402753[5]

LCMS(ID Probability):99.2

Protein

yihA

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MLALTNSGCL NESDSHIIRG IKMETTKPSF QDVLEFVRLF RRKNKLQREI QDVEKKIRDN
QKRVLLLDNL SDYIKPGMSV EAIQGIIASM KGDYEDRVDD YIIKNAELSK ERRDISKKLK
AMGEMKNGEA K
Length

131

Mol. Wt

15.133 kDa

pI

9.5 (calculated)

Extinction coefficient

4,470 - 4,595 (calc based on 3 Y, 0 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

8..102

PF04363 Protein of unknown function (DUF496)

PMID:19920124[6]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yeeX taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:145698283

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946541

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006663

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A8M6

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7087

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13391

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946541

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003673

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3172

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 5.30 5.31 5.32 5.33 5.34 5.35 5.36 5.37 5.38 5.39 5.40 5.41 5.42 5.43 5.44 5.45 5.46 5.47 5.48 5.49 5.50 5.51 5.52 5.53 5.54 5.55 5.56 5.57 5.58 5.59 5.60 5.61 5.62 5.63 5.64 5.65 5.66 5.67 5.68 5.69 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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