yeeR:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YeeR

Synonyms

CP4-44 prophage; predicted membrane protein[1], B2001[2][1], YeeR[2][1] , ECK1994, JW1983, b2001

Product description

hypothetical protein[2]; CP4-44 prophage; predicted membrane protein[3]

Function unknown, CP4-44 putative defective prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

yhfG

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

fic

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 6 predicted transmembrane domains

Daley et al. (2005) [6]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTMLQIVGAL ILLIAGFAIL RLLFRALIST ASALAGLILL CLFGPALLAG YITERITRLF
HIRWLAGVFL TIAGMIISFM WGLDGKHIAL EAHTFDSVKF ILTTALAGGL LAVPLQIKNI
QQNGITPEDI SKEINGYYCC FYTAFFLMAC SACAPLIALQ YDISPSLMWW GGLLYWLAAL
VTLLWAASQI QALKKLTCAI SQTLEEQPVL NSKSWLTSLQ NDYSLPDSLT ERIWLTLISQ
RISRGELREF ELADGNWLLN NAWYERNMAG FNEQLKENLS FTPDELKTLF RNRLNLSPEA
NDDFLDRCLD GGDWYPFSEG RRFVSFHHVD ELRICASCGL TEVHHAPENH KPDPEWYCSS
LCRETETLCQ EIYERPYNSF ISDATANGLI LMKLPETWST NEKMFASGGQ GHGFAAERGN
HIVDRVRLKN ARILGDNNAR NGADRLVSGT EIQTKYCSTA ARSVGAAFDG QNGQYRYMGN
NGPMQLEVPR DQYAGAVETM RNKIREGKVE ER
Length

512

Mol. Wt

57.471 kDa

pI

6.1 (calculated)

Extinction coefficient

95,340 - 96,965 (calc based on 16 Y, 13 W, and 13 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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tmhmm.php?gene=yeeR&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yeeR taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111368

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946512

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006648

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76361

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7081

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13385

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946512

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003667

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3166

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed

Categories

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