yecA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YecA

Synonyms

conserved metal-binding protein[1], YecA[2][1], B1908[2][1] , ECK1907, JW1896, b1908

Product description

putative protein translocase subunit[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

hflK

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

mrcA

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rpsM

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

xdhB

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rpsG

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rpsE

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rpsN

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rpsB

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

dadA

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

infB

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rpsU

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

narZ

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

mutS

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rpsI

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rplO

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rplF

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rpoC

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

secA

PMID:16606699[5]

Experiment(s):EBI-1141281

Protein

rne

PMID:16606699[5]

Experiment(s):EBI-1141281
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKTGPLNESE LEWLDDILTK YNTDHAILDV AELDGLLTAV LSSPQEIEPE QWLVAVWGGA
DYVPRWASEK EMTRFMNLAF QHMADTAERL NEFPEQFEPL FGLREVDGSE LTIVEEWCFG
YMRGVALSDW STLPDSLKPA LEAIALHGTE ENFERVEKMS PEAFEESVDA IRLAALDLHA
YWMAHPQEKA VQQPIKAEEK PGRNDPCPCG SGKKFKQCCL H
Length

221

Mol. Wt

25.039 kDa

pI

4.4 (calculated)

Extinction coefficient

44,460 - 45,085 (calc based on 4 Y, 7 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

203..221

PF02810 SEC-C motif

PMID:19920124[6]

Domain

11..186

PF03695 Uncharacterised protein family (UPF0149)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yecA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129858

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945061

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006357

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AD05

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11139

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11139

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945061

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001123

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1129

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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