yebG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YebG

Synonyms

conserved protein regulated by LexA[1], B1848[2][1], YebG[2][1] , ECK1849, JW1837, b1848

Product description

conserved protein regulated by LexA[2][3]

DNA damage-inducible gene, SOS regulon; requires H-NS and cAMP for induction[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplF

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

slt

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

pepD

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

hcaE

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

glgB

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

ybgE

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

rpsA

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

ycbY

PMID:16606699[5]

Experiment(s):EBI-1140995

Protein

iscS

PMID:19402753[6]

MALDI(Z-score):32.616975

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAVEVKYVVI REGEEKMSFT SKKEADAYDK MLDTADLLDT WLTNSPVQME DEQREALSLW
LAEQKDVLST ILKTGKLPSP QVVGAESEEE DASHAA
Length

96

Mol. Wt

10.716 kDa

pI

4.2 (calculated)

Extinction coefficient

13,980 (calc based on 2 Y, 2 W, and 0 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

1..75

PF07130 YebG protein

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yebG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129801

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946364

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006145

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ACY9

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11808

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11808

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946364

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001742

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1756

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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