yeaZ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YeaZ

Synonyms

predicted peptidase[1], B1807[2][1], YeaZ[2][1] , ECK1805, JW1796, rpf, b1807

Product description

predicted peptidase[2][3]

Putative protease, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0004222

metalloendopeptidase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000905

F

Seeded from EcoCyc (v14.0)

complete

GO:0005515

protein binding

PMID:19376873[5]

IPI: Inferred from Physical Interaction

UniProtKB:P05852
UniProtKB:P0AF67

F

Seeded from EcoCyc (v14.0)

complete

GO:0006508

proteolysis

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000905

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aroK

PMID:15690043[6]

Experiment(s):EBI-881680

Protein

ugpB

PMID:16606699[7]

Experiment(s):EBI-1140882

Protein

ada

PMID:16606699[7]

Experiment(s):EBI-1140882

Protein

fixB

PMID:16606699[7]

Experiment(s):EBI-1140882

Protein

thiH

PMID:16606699[7]

Experiment(s):EBI-1140882

Protein

yjgR

PMID:16606699[7]

Experiment(s):EBI-1140882

Protein

ygcK

PMID:16606699[7]

Experiment(s):EBI-1140882

Protein

yeaT

PMID:16606699[7]

Experiment(s):EBI-1140882

Protein

aroK

PMID:19402753[8]

MALDI(Z-score):17.053160

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRILAIDTAT EACSVALWND GTVNAHFELC PREHTQRILP MVQDILTTSG TSLTDINALA
YGRGPGSFTG VRIGIGIAQG LALGAELPMI GVSTLMTMAQ GAWRKNGATR VLAAIDARMG
EVYWAEYQRD ENGIWHGEET EAVLKPEIVH ERMQQLSGEW VTVGTGWQAW PDLGKESGLV
LRDGEVLLPA AEDMLPIACQ MFAEGKTVAV EHAEPVYLRN NVAWKKLPGK E
Length

231

Mol. Wt

25.18 kDa

pI

4.9 (calculated)

Extinction coefficient

49,960 - 50,335 (calc based on 4 Y, 8 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

26..159

PF00814 Glycoprotease family

PMID:19920124[9]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yeaZ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129761

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946304

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76256

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946304

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Handford, JI et al. (2009) Conserved network of proteins essential for bacterial viability. J. Bacteriol. 191 4732-49 PubMed
  6. ↑ Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ 7.0 7.1 7.2 7.3 7.4 7.5 7.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  8. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  9. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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