ydjL:Gene Product(s)
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Standard name |
YdjL |
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Synonyms |
predicted oxidoreductase, Zn-dependent and NAD(P)-binding[1], B1776[2][1], YdjL[2][1] , ECK1774, JW1765, b1776 |
Product description |
predicted oxidoreductase, Zn-dependent and NAD(P)-binding[2][3] Putative alcohol dehydrogenase, function unknown; Zn-type[4] |
EC number (for enzymes) |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
---|---|---|---|---|---|---|---|---|
GO:0003824 |
catalytic activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0005488 |
binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0008152 |
metabolic process |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0008270 |
zinc ion binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0008270 |
zinc ion binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0008270 |
zinc ion binding |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0008270 |
zinc ion binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0016491 |
oxidoreductase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0016491 |
oxidoreductase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0016491 |
oxidoreductase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0016491 |
oxidoreductase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0016491 |
oxidoreductase activity |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0046872 |
metal ion binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0055114 |
oxidation reduction |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0055114 |
oxidation reduction |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0055114 |
oxidation reduction |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0055114 |
oxidation reduction |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Partner Type | Partner | Notes | References | Evidence |
---|---|---|---|---|
Protein |
gapA |
LCMS(ID Probability):99.4 | ||
Protein |
eno |
LCMS(ID Probability):99.6 | ||
Protein |
yfiD |
LCMS(ID Probability):99.5 | ||
Protein |
dnaN |
LCMS(ID Probability):99.6 | ||
Protein |
secA |
LCMS(ID Probability):99.6 | ||
Protein |
rplM |
LCMS(ID Probability):99.6 | ||
Protein |
gadB |
LCMS(ID Probability):99.6 | ||
Protein |
grpE |
LCMS(ID Probability):99.6 | ||
Protein |
rplS |
LCMS(ID Probability):99.6 | ||
Protein |
rpsT |
LCMS(ID Probability):99.6 | ||
Protein |
yqjD |
LCMS(ID Probability):99.6 | ||
Protein |
yejK |
LCMS(ID Probability):99.1 | ||
Protein |
arpA |
LCMS(ID Probability):99.6 | ||
Protein |
malE |
LCMS(ID Probability):99.6 | ||
Protein |
ydiZ |
LCMS(ID Probability):99.6 | ||
Protein |
pntA |
LCMS(ID Probability):99.3 | ||
Protein |
caiT |
LCMS(ID Probability):99.6 | ||
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Compartment | Description | Evidence | Reference/Source | Notes |
---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Name | |
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Sequence |
MKALARFGKA FGGYKMIDVP QPMCGPEDVV IEIKAAAICG ADMKHYNVDS GSDEFNSIRG HEFAGCIAQV GEKVKDWKVG QRVVSDNSGH VCGVCPACEQ GDFLCCTEKV NLGLDNNTWG GGFSKYCLVP GEILKIHRHA LWEIPDGVDY EDAAVLDPIC NAYKSIAQQS KFLPGQDVVV IGTGPLGLFS VQMARIMGAV NIVVVGLQED VAVRFPVAKE LGATAVVNGS TEDVVARCQQ ICGKDNLGLV IECSGANIAL KQAIEMLRPN GEVVRVGMGF KPLDFSINDI TAWNKSIIGH MAYDSTSWRN AIRLLASGAI KVKPMITHRI GLSQWREGFD AMVDKTAIKV IMTYDFDE |
Length |
358 |
Mol. Wt |
38.73 kDa |
pI |
5.7 (calculated) |
Extinction coefficient |
43,430 - 45,055 (calc based on 7 Y, 6 W, and 13 C residues) |
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Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Resource type | Source | Notes/Reference |
---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
Name | URL | Comments |
---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
- ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
Categories
- GO:0003824 ! catalytic activity
- GO:0005488 ! binding
- GO:0008152 ! metabolic process
- GO:0008270 ! zinc ion binding
- GO:0016491 ! oxidoreductase activity
- GO:0046872 ! metal ion binding
- GO:0055114 ! oxidation-reduction process
- Proteins
- Pfam:PF00107 ! Zinc-binding dehydrogenase
- Pfam:PF08240 ! Alcohol dehydrogenase GroES-like domain