ydiZ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdiZ

Synonyms

predicted protein[1], B1724[2][1], YdiZ[2][1] , ECK1722, JW1713, b1724

Product description

conserved hypothetical protein[2]; predicted protein[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006974

response to DNA damage stimulus

PMID:11967071[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

selB

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

insB2

PMID:16606699[6]

Experiment(s):EBI-1140602, EBI-1140602

Protein

rpsE

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

priB

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

rplN

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

rplB

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

yfjG

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

rplE

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

serS

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

pepD

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

yibL

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

dnaK

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

rpsC

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

rpsB

PMID:16606699[6]

Experiment(s):EBI-1140602

Protein

rpsT

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

ydiI

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

mnmC

PMID:19402753[7]

LCMS(ID Probability):99.4

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MASGDLVRYV ITVMLHEDTL TEINELNNYL TRDGFLLTMT DDEGNIHELG TNTFGLISTQ
SEEEIRELVS GLTQSATGKD PEITITTWEE WNSNRK
Length

96

Mol. Wt

10.864 kDa

pI

4.1 (calculated)

Extinction coefficient

13,980 (calc based on 2 Y, 2 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..96

PF11080 Protein of unknown function (DUF2622)

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydiZ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129678

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946232

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005751

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P64479

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6929

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13985

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946232

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003517

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3741

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.0 7.1 7.2 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

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