ydiR:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdiR

Synonyms

predicted electron transfer flavoprotein, FAD-binding[1], B1698[2][1], YdiR[2][1] , ECK1696, JW1688, b1698

Product description

putative subunit of YdiQ-YdiR flavoprotein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006810

transport

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0813

P

Seeded from EcoCyc (v14.0)

complete

GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001308

F

Seeded from EcoCyc (v14.0)

complete

GO:0022900

electron transport chain

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0249

P

Seeded from EcoCyc (v14.0)

complete

GO:0050660

FAD binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001308

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSQLNSVWVF SDNPERYAEL FGGAQQWGQQ VYAIVQNTDQ AQAVMPYGPK CLYVLAQNDA
LQRTENYAES IAALLKDKHP AMLLLAATKR GKALAARLSV QLNAALVNDA TAVDIVDGHI
CAEHRMYGGL AFAQEKINSP LAIITLAPGV QEPCTSDTSH QCPTETVPYV APRHEILCRE
RRAKAASSVD LSKAKRVVGV GRGLAAQDDL KMVHELAAVL NAEVGCSRPI AEGENWMERE
RYIGVSGVLL KSDLYLTLGI SGQIQHMVGG NGAKVIVAIN KDKNAPIFNY ADYGLVGDIY
KVVPALISQL SR
Length

312

Mol. Wt

33.769 kDa

pI

7.2 (calculated)

Extinction coefficient

34,380 - 35,130 (calc based on 12 Y, 3 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

188..274

PF00766 Electron transfer flavoprotein FAD-binding domain

PMID:19920124[5]

Domain

6..153

PF01012 Electron transfer flavoprotein domain

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydiR taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129654

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945688

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005668

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77378

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6921

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13977

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945688

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003509

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3734

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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