ydhV:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdhV

Synonyms

predicted oxidoreductase[1], YdhV[2][1], B1673[2][1] , ECK1669, JW5272, b1673

Product description

predicted oxidoreductase[2][3]

Predicted oxidoreductase, function unknown; FNR, NarL and NarP regulons[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0009055

electron carrier activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001203

F

Seeded from EcoCyc (v14.0)

complete

GO:0016491

oxidoreductase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

F

Seeded from EcoCyc (v14.0)

complete

GO:0016625

oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001203

F

Seeded from EcoCyc (v14.0)

complete

GO:0016625

oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013983

F

Seeded from EcoCyc (v14.0)

complete

GO:0016625

oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013985

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001203

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013983

F

Seeded from EcoCyc (v14.0)

complete

GO:0051536

iron-sulfur cluster binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013985

F

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013985

P

Seeded from EcoCyc (v14.0)

complete

GO:0055114

oxidation reduction

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0560

P

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MANGWTGNIL RVNLTTGNIT LEDSSKFKSF VGGMGFGYKI MYDEVPPGTK PFDEANKLVF
ATGPLTGSGA PCSSRVNITS LSTFTKGNLV VDAHMGGFFA AQMKFAGYDV IIIEGKAKSP
VWLKIKDDKV SLEKADFLWG KGTRATTEEI CRLTSPETCV AAIGQAGENL VPLSGMLNSR
NHSGGAGTGA IMGSKNLKAI AVEGTKGVNI ADRQEMKRLN DYMMTELIGA NNNHVVPSTP
QSWAEYSDPK SRWTARKGLF WGAAEGGPIE TGEIPPGNQN TVGFRTYKSV FDLGPAAEKY
TVKMSGCHSC PIRCMTQMNI PRVKEFGVPS TGGNTCVANF VHTTIFPNGP KDFEDKDDGR
VIGNLVGLNL FDDYGLWCNY GQLHRDFTYC YSKGVFKRVL PAEEYAEIRW DQLEAGDVNF
IKDFYYRLAH RVGELSHLAD GSYAIAERWN LGEEYWGYAK NKLWSPFGYP VHHANEASAQ
VGSIVNCMFN RDCMTHTHIN FIGSGLPLKL QREVAKELFG SEDAYDETKN YTPINDAKIK
YAKWSLLRVC LHNAVTLCNW VWPMTVSPLK SRNYRGDLAL EAKFFKAITG EEMTQEKLDL
AAERIFTLHR AYTVKLMQTK DMRNEHDLIC SWVFDKDPQI PVFTEGTDKM DRDDMHASLT
MFYKEMGWDP QLGCPTRETL QRLGLEDIAA DLAAHNLLPA
Length

700

Mol. Wt

77.877 kDa

pI

6.8 (calculated)

Extinction coefficient

123,760 - 125,635 (calc based on 24 Y, 16 W, and 15 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

225..685

PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3

PMID:19920124[5]

Domain

5..206

PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydhV taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129629

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:948756

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005587

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76192

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6901

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13956

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:948756

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003490

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3714

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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