ydhS:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

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Standard name

YdhS

Synonyms

conserved protein with FAD/NAD(P)-binding domain[1], YdhS[2][1], B1668[2][1] , ECK1664, JW1658, b1668

Product description

conserved protein with FAD/NAD(P)-binding domain[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

nadE

PMID:16606699[5]

Experiment(s):EBI-1140430
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKKIAIVGAG PTGIYTLFSL LQQQTPLSIS IFEQADEAGV GMPYSDEENS KMMLANIASI
EIPPIYCTYL EWLQKQEDSH LQRYGVKKET LHDRQFLPRI LLGEYFRDQF LRLVDQARQQ
KFAVAVYESC QVTDLQITNA GVMLATNQDL PSETFDLAVI ATGHVWPDEE EATRTYFPSP
WSGLMEAKVD ACNVGIMGTS LSGLDAAMAV AIQHGSFIED DKQHVVFHRD NASEKLNITL
LSRTGILPEA DFYCPIPYEP LHIVTDQALN AEIQKGEEGL LDRVFRLIVE EIKFADPDWS
QRIALESLNV DSFAQAWFAE RKQRDPFDWA EKNLQEVERN KREKHTVPWR YVILRLHEAV
QEIVPHLNEH DHKRFSKGLA RVFIDNYAAI PSESIRRLLA LREAGIIHIL ALGEDYKMEI
NESRTVLKTE DNSYSFDVFI DARGQRPLKV KDIPFPGLRE QLQKTGDEIP DVGEDYTLQQ
PEDIRGRVAF GALPWLMHDQ PFVQGLTACA EIGEAMARAV VKPASRARRR LSFD
Length

534

Mol. Wt

60.755 kDa

pI

5.0 (calculated)

Extinction coefficient

66,350 - 66,975 (calc based on 15 Y, 8 W, and 5 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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Structure
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Structures

<beststructure> gene=ydhS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129624

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945786

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005575

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77148

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6896

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13953

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945786

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003485

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3711

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

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