ydhQ:Gene Product(s)

From EcoliWiki
Jump to: navigation, search

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdhQ

Synonyms

conserved protein[1], B1664[2][1], YdhQ[2][1] , ECK1660, JW1656, b1664

Product description

possible enzyme[2][3]

Function unknown[4]

EC number (for enzymes)


edit table

<protect></protect>

Notes

Function

[back to top]


<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006974

response to DNA damage stimulus

PMID:11967071[5]

IEP: Inferred from Expression Pattern

P

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

rplA

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

rpsB

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

dnaK

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

uup

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

yciH

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

idnO

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

rfaJ

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

nfrB

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

motB

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

rplK

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

nadE

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

fusA

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

rplN

PMID:16606699[6]

Experiment(s):EBI-1140414

Protein

ndk

PMID:16606699[6]

Experiment(s):EBI-1140414
edit table

</protect>

Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

<protect></protect>

Notes

Structure and Physical Properties

[back to top]


<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGSDAKNLMS DGNVQIVKTG EVIGATQLTE GELIVEAGGR AENTVVTGAG WLKVATGGIA
KCTQYGNNGT LSVSDGAIAT DIVQSEGGAI SLSTLATVNG RHPEGEFSVD KGYACGLLLE
NGGNLRVLEG HRAEKIILDQ EGGLLVNGTT SAVVVDEGGE LLVYPGGEAS NCEINQGGVF
MLAGKASDTL LAGGTMNNLG GEDSDTIVEN GSIYRLGTDG LQLYSSGKTQ NLSVNVGGRA
EVHAGTLENA VIQGGTVILL SPTSADENFV VEEDRAPVEL TGSVALLDGA SMIIGYGAEL
QQSTITVQQG GVLILDGSTV KGDSVTFIVG NINLNGGKLW LITDAATHVQ LKVKRLRGEG
AICLQTSAKE ISPDFINVKG EVTGDIHVEI TDASRQTLCN ALKLQPDEDG IGATLQPA
Length

418

Mol. Wt

42.875 kDa

pI

4.3 (calculated)

Extinction coefficient

19,940 - 20,565 (calc based on 6 Y, 2 W, and 5 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

329..414

PF03212 Pertactin

PMID:19920124[7]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydhQ taxon=562,83333 </beststructure>

Models

View models at:

edit table
</protect>

Structure figures

<protect>

</protect>

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table

<protect></protect>

Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129622

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944851

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005563

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P77552

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6894

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13951

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944851

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003483

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3709

Escherichia coli str. K-12 substr. MG1655

edit table

<protect></protect>

Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed
  6. ↑ 6.00 6.01 6.02 6.03 6.04 6.05 6.06 6.07 6.08 6.09 6.10 6.11 6.12 6.13 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ydhQ:Gene_Product(s)&oldid=1493597"