ydgH:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YdgH |
|---|---|
| Synonyms |
predicted protein[1], B1604[2][1], YdgH[2][1] , ECK1599, JW1596, b1604 |
| Product description |
conserved hypothetical protein[2][3] Predicted periplasmic protein, YhcN family, function unknown; contains 3 tandem YhcN domains[4] |
| EC number (for enzymes) |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MKLKNTLLAS ALLSAMAFSV NAATELTPEQ AAAVKPFDRV VVTGRFNAIG EAVKAVSRRA DKEGAASFYV VDTSDFGNSG NWRVVADLYK ADAEKAEETS NRVINGVVEL PKDQAVLIEP FDTVTVQGFY RSQPEVNDAI TKAAKAKGAY SFYIVRQIDA NQGGNQRITA FIYKKDAKKR IVQSPDVIPA DSEAGRAALA AGGEAAKKVE IPGVATTASP SSEVGRFFET QSSKGGRYTV TLPDGTKVEE LNKATAAMMV PFDSIKFSGN YGNMTEVSYQ VAKRAAKKGA KYYHITRQWQ ERGNNLTVSA DLYK |
| Length |
314 |
| Mol. Wt |
33.902 kDa |
| pI |
9.7 (calculated) |
| Extinction coefficient |
28,880 (calc based on 12 Y, 2 W, and 0 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
NMR and X-ray crystallographic studies of four DUF1471 domains from 3 paralogous DUF1471 subfamilies in Salmonella have been reported, including Salmonella SssB/YdgH and YahO.[6]
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
- ↑ Eletsky, A et al. (2014) Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO. PLoS ONE 9 e101787 PubMed
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