ydfU:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdfU

Synonyms

Qin prophage; predicted protein[1], B1560[2][1], YdfU[2][1] , ECK1554, JW5909, b1560

Product description

Qin prophage; predicted protein[2][3]

Function unknown, Qin prophage[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRPALSSNGS GGNVRVLLRP VLVPELGLVV LKPGRESIQI FHNPRVLVEP EPKSMRNLPS
GVVPAVRQPL AEDKTLLPFF SNERVIRAAG GVGALSDWLL RHVTSCQWPN GDYHHTETVI
HRYGTGAMVL CWHCDNQLRD QTSESLELLA QQNLTAWVID VIRHAISGTQ ERELSLAELS
WWAVCNQVVD ALPEAVSRRS LGLPAEKICS VYRESDIVPG ELTATSILKQ RTKNLAPLPY
AHQQQKSPQE KTVVSITVDP ESPESFMKLP KRRRWVKEKY TRWVKTQPCA CCGMPADDPH
HLIGHGQGGM GTKAHDLFVL PLCRKHHNEL HTDTVAFEDK YGSQLELIFR FIDRALAIGV LA
Length

362

Mol. Wt

40.456 kDa

pI

8.1 (calculated)

Extinction coefficient

52,940 - 54,065 (calc based on 6 Y, 8 W, and 9 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

95..312

PF06147 Protein of unknown function (DUF968)

PMID:19920124[5]

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Structure
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Structures

<beststructure> gene=ydfU taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:226524716

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946108

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005209

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76162

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6831

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13833

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946108

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003420

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3594

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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