ydeU:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YdeU |
|---|---|
| Synonyms | |
| Product description |
conserved protein[1]; putative ATP-binding component of transport system and adhesin protein[2] Autotransporter homolog, function unknown[3] |
| EC number (for enzymes) |
|
| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0019867 |
outer membrane |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
secB |
Experiment(s):EBI-1139997 | ||
|
Protein |
thrS |
Experiment(s):EBI-1139997 | ||
|
Protein |
groL |
Experiment(s):EBI-1139997 | ||
|
Protein |
dnaK |
Experiment(s):EBI-1139997 | ||
|
Protein |
rng |
Experiment(s):EBI-1139997 | ||
|
Protein |
degQ |
Experiment(s):EBI-1139997 | ||
|
Protein |
rnb |
Experiment(s):EBI-1139997 | ||
|
Protein |
moeB |
Experiment(s):EBI-1139997 | ||
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MNSEGGKPGN VLTVNGNYTG NNGLMTFNAT LGGDNSPTDK MNVKGDTQGN TRVRVDNIGG VGAQTVNGIE LIEVGGNSAG NFALTTGTVE AGAYVYTLAK GKGNDEKNWY LTSKWDGVTP ADTPDPINNP PVVDPEGPSV YRPEAGSYIS NIAAANSLFS HRLHDRLGEP QYTDSLHSQG SASSMWMRHV GGHERSRAGD GQLNTQANRY VLQLGGDLAQ WSSNAQDRWH LGVMAGYANQ HSNTQSNRVG YKSDGRISGY SAGLYATWYQ NDANKTGAYV DSWALYNWFD NSVSSDNRSA DDYDSRGVTA SVEGGYTFEA GTFSGSEGTL NTWYVQPQAQ ITWMGVKDSD HTRKDGTRIE TEGDGNVQTR LGVKTYLNSH HQRDDGKQRE FQPYIEANWI NNSKVYAVKM NGQTVGREGA RNLGEVRTGV EAKVNNNLSL WGNVGVQLGD KGYSDTQGML GVKYSW |
| Length |
466 |
| Mol. Wt |
50.537 kDa |
| pI |
5.9 (calculated) |
| Extinction coefficient |
105,770 (calc based on 23 Y, 13 W, and 0 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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