ydeT:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdeT

Synonyms

predicted protein[1], B1505[2][1], YdeT[2][1] , ECK1498, fmlC, JW1499, b1505

Product description

putative outer membrane protein[2]; predicted protein[3]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005215

transporter activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000015

F

Seeded from EcoCyc (v14.0)

complete

GO:0006810

transport

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000015

P

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000015

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSGYTVKPPT GDTNEQTQFI DYFNLFYSKR GQEQISISQQ LGNYGTTFFS ASRQSYWNTS
RSDQQISFGL NVPFGDITTS LNYSYSNNIW QNDRDHLLAF TLNVPFSHWM RTDSQSAFRN
SNASYSMSND LKGGMTNLSG VYGTLLPDNN LNYSVQVGNT HGGNTSSGTS GYSSLNYRGA
YGNTNVGYSR SGDSSQIYYG MSGGIIAHAD GITFGQPLGD TMVLVKAPGA DNVKIENQTG
IHTDWRGYAI LPFATEYREN RVALNANSLA DNVELDETVV TVIPTHGAIA RATFNAQIGG
KVLMTLKYGN KSVPFGAIVT HGENKNGSIV AENGQVYLTG LPQSGQLQVS WGKDKNSNCI
VEYKLPEVSP GTLLNQQTAI CR
Length

382

Mol. Wt

41.615 kDa

pI

6.6 (calculated)

Extinction coefficient

58,790 - 59,040 (calc based on 21 Y, 5 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

4..366

PF00577 Fimbrial Usher protein

PMID:19920124[4]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydeT taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

ASAP

ASAP:ABE-0005017

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946042

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76137

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6795

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13802

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946042

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003384

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3563

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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