ydeK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdeK

Synonyms

predicted lipoprotein[1], B1510[2][1], YdeK[2][1], OrfT[2][1]

Product description

predicted lipoprotein[2][3]

Putative OM autotransporter adhesin, function unknown; AidA homolog[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0031225

anchored to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9901

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MNRIYRVIWN CTLQVFQACS ELTRRAGKTS TVNLRKSSGL TTKFSRLTLG VLLALSGSAS
GASLEVDNDQ ITNIDTDVAY DAYLVGWYGT GVLNILAGGN ASLTTITTSV IGANEDSEGT
VNVLGGTWRL YDSGNNARPL NVGQSGTGTL NIKQKGHVDG GYLRLGSSTG GVGTVNVEGE
DSVLTTELFE IGSYGTGSLN ITDKGYVTSS IVAILGYQAG SNGQVVVEKG GEWLIKNNDS
SIEFQIGNQG TGEATIREGG LVTAENTIIG GNATGIGTLN VQDQDSVITV RRLYNGYFGN
GTVNISNNGL INNKEYSLVG VQDGSHGVVN VTDKGHWNFL GTGEAFRYIY IGDAGDGELN
VSSEGKVDSG IITAGMKETG TGNITVKDKN SVITNLGTNL GYDGHGEMNI SNQGLVVSNG
GSSLGYGETG VGNVSITTGG MWEVNKNVYT TIGVAGVGNL NISDGGKFVS QNITFLGDKA
SGIGTLNLMD ATSSFDTVGI NVGNFGSGIV NVSNGATLNS TGYGFIGGNA SGKGIVNIST
DSLWNLKTSS TNAQLLQVGV LGTGELNITT GGIVKARDTQ IALNDKSKGD VRVDGQNSLL
ETFNMYVGTS GTGTLTLTNN GTLNVEGGEV YLGVFEPAVG TLNIGAAHGE AAADAGFITN
ATKVEFGLGE GVFVFNHTNN SDAGYQVDML ITGDDKDGKV IHDAGHTVFN AGNTYSGKTL
VNDGLLTIAS HTADGVTGMG SSEVTIANPG TLDILASTNS AGDYTLTNAL KGDGLMRVQL
SSSDKMFGFT HATGTEFAGV AQLKDSTFTL ERDNTAALTH AMLQSDSENT TSVKVGEQSI
GGLAMNGGTI IFDTDIPAAT LAEGYISVDT LVVGAGDYTW KGRNYQVNGT GDVLIDVPKP
WNDPMANNPL TTLNLLEHDD SHVGVQLVKA QTVIGSGGSL TLRDLQGDEV EADKTLHIAQ
NGTVVAEGDY GFRLTTAPGN GLYVNYGLKA LNIHGGQKLT LAEHGGAYGA TADMSAKIGG
EGDLAINTVR QVSLSNGQND YQGATYVQMG TLRTDADGAL GNTRELNISN AAIVDLNGST
QTVETFTGQM GSTVLFKEGA LTVNKGGISQ GELTGGGNLN VTGGTLAIEG LNARYNALTS
ISPNAEVSLD NTQGLGRGNI ANDGLLTLKN VTGELRNSIS GKGIVSATAR TDVELDGDNS
RFVGQFNIDT GSALSVNEQK NLGDASVINN GLLTISTERS WAMTHSISGS GDVTKLGTGI
LTLNNDSAAY QGTTDIVGGE IAFGSDSAIN MASQHINIHN SGVMSGNVTT AGDMNVMPGG
GTACR
Length

1,325

Mol. Wt

136.515 kDa

pI

4.5 (calculated)

Extinction coefficient

105,660 - 106,035 (calc based on 34 Y, 10 W, and 3 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

motif

1-18

UniProt Manual:Signal Peptides

UniProt:P32051


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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydeK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG11780

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11780

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001714

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1728

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005037

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

Categories

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