ydcK:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdcK

Synonyms

predicted enzyme[1], B1428[2][1], YdcK[2][1] , ECK1421, JW1424, b1428

Product description

predicted enzyme[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0008415

acyltransferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0012

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR011004

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

selB

PMID:16606699[5]

Experiment(s):EBI-1139824

Protein

ytfM

PMID:16606699[5]

Experiment(s):EBI-1139824

Protein

thrS

PMID:16606699[5]

Experiment(s):EBI-1139824

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1139824
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRKYRLSEEQ RAFSYQEDGT KKNVLLRQII AISDFNDVIA GTAGGWIDRE TVLAQEGNCW
IYDQNAIAFG GAVISGNTRI TGTSVLWGEV YATDNVWIDN SEISQGAYIS DSVTIHDSLV
YGQCRIFGHA LIDQHSMIVA AQGLTPDHQL LLQIYDRARV SASRIVHQAQ IYGDAVVRYA
FIEHRAEVFD FASIEGNEEN NVWLCDCAKV YGHAQVKAGI EEDAIPTIHY SSQVAEYAIV
EGNCVLKHHV LVGGNAVVRG GPILLDEHVV IQGESRITGA VIIENHVELT DHAVVEAFDG
DTVHVRGPKV INGEERITRT PLAGLL
Length

326

Mol. Wt

35.848 kDa

pI

5.0 (calculated)

Extinction coefficient

45,380 - 46,005 (calc based on 12 Y, 5 W, and 5 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydcK taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129387

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944932

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004765

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76100

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6741

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13754

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944932

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003330

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3517

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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