ydcI:Gene Product(s)
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Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
Standard name |
YdcI |
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Synonyms |
predicted DNA-binding transcriptional regulator[1], B1422[2][1], YdcI[2][1] , ECK1416, JW5226, b1422 |
Product description |
putative transcriptional regulator LysR-type[2][3] Function unknown[4] |
EC number (for enzymes) |
|
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Notes
In Salmonella typhimurium, ydcI is needed for full acid stress resistance.[5] The amino acid sequences of E. coli K-12 YdiC and Salmonella typhimurium YdcI align with 255/306 (83%) identifies and 284/306 (92%) positives.(Siegele 22:29, 27 May 2011 (UTC))
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
---|---|---|---|---|---|---|---|---|
GO:0003677 |
DNA binding |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0003700 |
transcription factor activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0006350 |
transcription |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0006350 |
transcription |
ISS: Inferred from Sequence or Structural Similarity |
Swiss-Prot:P03030 |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0006355 |
regulation of transcription, DNA-dependent |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0016563 |
transcription activator activity |
ISS: Inferred from Sequence or Structural Similarity |
Swiss-Prot:P03030 |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
GO:0016564 |
transcription repressor activity |
ISS: Inferred from Sequence or Structural Similarity |
Swiss-Prot:P03030 |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
Partner Type | Partner | Notes | References | Evidence |
---|---|---|---|---|
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
Compartment | Description | Evidence | Reference/Source | Notes |
---|---|---|---|---|
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
Name | |
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Sequence |
MISPRKHQYY PFCCNIIALI VNNILQSSYH NQTTSLVSDT ASFLTSLMEK NSLFSQRIRL RHLHTFVAVA QQGTLGRAAE TLNLSQPALS KTLNELEQLT GARLFERGRQ GAQLTLPGEQ FLTHAVRVLD AINTAGRSLH RKEGLNNDVV RVGALPTAAL GILPSVIGQF HQQQKETTLQ VATMSNPMIL AGLKTGEIDI GIGRMSDPEL MTGLNYELLF LESLKLVVRP NHPLLQENVT LSRVLEWPVV VSPEGTAPRQ HSDALVQSQG CKIPSGCIET LSASLSRQLT VEYDYVWFVP SGAVKDDLRH ATLVALPVPG HGAGEPIGIL TRVDATFSSG CQLMINAIRK SMPF |
Length |
354 |
Mol. Wt |
38.717 kDa |
pI |
8.2 (calculated) |
Extinction coefficient |
19,940 - 20,565 (calc based on 6 Y, 2 W, and 5 C residues) |
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Domains/Motifs/Modification Sites
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
Resource type | Source | Notes/Reference |
---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
Database | Accession | Notes |
---|---|---|
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
Name | URL | Comments |
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Jennings, ME et al. (2011) Characterization of the Salmonella enterica serovar Typhimurium ydcI gene, which encodes a conserved DNA binding protein required for full acid stress resistance. J. Bacteriol. 193 2208-17 PubMed
- ↑ 6.0 6.1 6.2 Pérez-Rueda, E et al. (2004) Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Comput Biol Chem 28 341-50 PubMed
- ↑ 7.0 7.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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