ydbD:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YdbD

Synonyms

predicted protein[1], B1407[2][1], YdbD[2][1] , ECK1400, JW5221, b1407

Product description

conserved hypothetical protein[2]; predicted protein[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MHMLKARNCG WIRLLPLFML SLPVQAELRC VANAVDIESF FSAATAEDKQ QVEQAINSSV
NLVPFGLSAS NWKVHRGDLV VEGNIESNQK LIVLGNLTVK GNISTFSLSN PWVILGNVTA
TNIVADSPLL ITGSINASGL VFIDSYYDNP STIKGSINAR GIFINDIIAP VVASSTNSEF
MVRASDKHDT ENVKKALMII NPDAYYWGLI NDEDALKEIF KRSNIRMAGN VCNQMKKEAL
FRPKPSPELV QELQMLDEGK VAAFEGRDIA TFDLAVMRTL PRLKGISANL RKQLINSNDE
QTIESMARYM PDNEILELTD QQLGYQPVVL GLLDREPLSV EIMTRMSRLP DGVGPLNLAL
RENLPLDIVM TLAKRDWDMI IQELYKDAWL LPESIIDGYI RSDDSSIRQV GAGGQLTYNQ
AMQLANDSSN NVVTSLAFKL AEMKHHGQLL RMTPQESDKV AGYLYQKFEN DDDLIRVLFL
ALPDNLQFNF VKRMEKKSPA YFCCRDMQVI HSDAALQRLL TRFNDPEGWS NLAKNQYLST
SMKQKIWQRA LSHRKNNPKA DSDAYETSAD MILSELISHG EVDDQMLLNA TALIRSDDWD
FLESALISWD NLPAVVLKEL QQNTPRNDIW AKFFLRQENS SRAQVDEALR VYYALDPDAL
AQLDVLAKQP DRIWWSTLAK SNLTFFKFGA LNNRHTPPAV LAAEIDPEWW IVAMNNPRFP
VDVLKARLKR DPLLALELVN PELDLVRQLA LNGKTRAIRE QAMRKLDELY
Length

770

Mol. Wt

86.987 kDa

pI

5.3 (calculated)

Extinction coefficient

107,830 - 108,455 (calc based on 17 Y, 15 W, and 5 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

688..768

PF10971 Protein of unknown function (DUF2773)

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ydbD taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111266

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945983

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004701

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P25907

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11310

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11310

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945983

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001281

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1286

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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