ycjN:Gene Product(s)
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| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
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| Standard name |
YcjN |
|---|---|
| Synonyms |
predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily[1], B1310[2][1], YcjN[2][1] , ECK1305, JW1303, b1310 |
| Product description |
Component of YcjN/YcjO/YcjP ABC transporter[2][3] Lipoprotein, function unknown; predicted ABC transporter periplasmic binding protein[4] |
| EC number (for enzymes) |
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| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0005215 |
transporter activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006810 |
transport |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0006810 |
transport |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0042597 |
periplasmic space |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0042597 |
periplasmic space |
IEA: Inferred from Electronic Annotation |
SP_SL:SL-0200 |
C |
Seeded from EcoCyc (v14.0) |
complete | ||
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
Subunits of YcjN/YcjO/YcjP ABC transporter |
could be indirect |
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| edit table |
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes | |
|---|---|---|---|---|---|
|
periplasm |
From EcoCyc[3] |
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|
Outer membrane |
PMID:15174130 |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MIKSKIVLLS ALVSCALISG CKEENKTNVS IEFMHSSVEQ ERQAVISKLI ARFEKENPGI TVKQVPVEED AYNTKVITLS RSGSLPEVIE TSHDYAKVMD KEQLIDRKAV ATVISNVGEG AFYDGVLRIV RTEDGSAWTG VPVSAWIGGI WYRKDVLAKA GLEEPKNWQQ LLDVAQKLND PANKKYGIAL PTAESVLTEQ SFSQFALSNQ ANVFNAEGKI TLDTPEMMQA LTYYRDLTAN TMPGSNDIME VKDAFMNGTA PMAIYSTYIL PAVIKEGDPK NVGFVVPTEK NSAVYGMLTS LTITAGQKTE ETEAAEKFVT FMEQADNIAD WVMMSPGAAL PVNKAVVTTA TWKDNDVIKA LGELPNQLIG ELPNIQVFGA VGDKNFTRMG DVTGSGVVSS MVHNVTVGKA DLSTTLQASQ KKLDELIEQH |
| Length |
430 |
| Mol. Wt |
46.807 kDa |
| pI |
4.8 (calculated) |
| Extinction coefficient |
47,900 - 48,150 (calc based on 10 Y, 6 W, and 2 C residues) |
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Domains/Motifs/Modification Sites
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Structure
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Structure figures<protect> | ||||||
Notes
Gene Product Resources
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| Resource type | Source | Notes/Reference |
|---|---|---|
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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