ycjM:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YcjM

Synonyms

predicted glucosyltransferase[1], B1309[2][1], YcjM[2][1], SucP[2][1] , ECK1304, JW1302, b1309

Product description

predicted glucosyltransferase[2][3]

Function unknown, homologous to sucrose phosphorylase[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006047

F

Seeded from EcoCyc (v14.0)

complete

GO:0003824

catalytic activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013781

F

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006047

P

Seeded from EcoCyc (v14.0)

complete

GO:0005975

carbohydrate metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013781

P

Seeded from EcoCyc (v14.0)

complete

GO:0005985

sucrose metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016377

P

Seeded from EcoCyc (v14.0)

complete

GO:0009018

sucrose phosphorylase activity

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016377

F

Seeded from EcoCyc (v14.0)

complete

GO:0009018

sucrose phosphorylase activity

GOA:spec
GO_REF:0000003

IEA: Inferred from Electronic Annotation

EC:2.4.1.7

F

Seeded from EcoCyc (v14.0)

complete

GO:0016740

transferase activity

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0808

F

Seeded from EcoCyc (v14.0)

complete

GO:0016757

transferase activity, transferring glycosyl groups

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0328

F

Seeded from EcoCyc (v14.0)

complete

GO:0043169

cation binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006047

F

Seeded from EcoCyc (v14.0)

complete

GO:0043169

cation binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR013781

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

sdhA

PMID:16606699[5]

Experiment(s):EBI-1139530

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1139530
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGPLPRKGNM KQKITDYLDE IYGGTFTATH LQKLVTRLES AKRLITQRRK KHWDESDVVL
ITYADQFHSN DLKPLPTFNQ FYHQWLQSIF SHVHLLPFYP WSSDDGFSVI DYHQVASEAG
EWQDIQQLGE CSHLMFDFVC NHMSAKSEWF KNYLQQHPGF EDFFIAVDPQ TDLSAVTRPR
ALPLLTPFQM RDHSTRHLWT TFSDDQIDLN YRSPEVLLAM VDVLLCYLAK GAEYVRLDAV
GFMWKEPGTS CIHLEKTHLI IKLLRSIIDN VAPGTVIITE TNVPHKDNIA YFGAGDDEAH
MVYQFSLPPL VLHAVQKQNV EALCAWAQNL TLPSSNTTWF NFLASHDGIG LNPLRGLLPE
SEILELVEAL QQEGALVNWK NNPDGTRSPY EINVTYMDAL SRRESSDEER CARFILAHAI
LLSFPGVPAI YIQSILGSRN DYAGVEKLGY NRAINRKKYH SKEITRELND EATLRHAVYH
ELSRLITLRR SHNEFHPDNN FTIDTINSSV MRIPRSNADG NCLTGLFNVS KNIQHVNITN
LHGRDLISEV DILGNEITLR PWQVMWIK
Length

568

Mol. Wt

65.138 kDa

pI

6.4 (calculated)

Extinction coefficient

94,310 - 95,185 (calc based on 19 Y, 12 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

73..342

PF00128 Alpha amylase, catalytic domain

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ycjM taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111247

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945659

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004400

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76041

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6647

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13910

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945659

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003242

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3669

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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