ycjG:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YcjG

Synonyms

L-Ala-D/L-Glu epimerase[1], B1325[2][1], YcjH[2][1], YcjG[2][1] , ECK1321, JW1318, ycjH, b1325

Product description

L-Ala-D/L-Glu epimerase, a muconate lactonizing enzyme[2]; L-Ala-D/L-Glu epimerase[3]

L-Ala-D/L-Glu epimerase; also epimerizes some other Ala-X dipeptides[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0000287

magnesium ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0460

F

Seeded from EcoCyc (v14.0)

complete

GO:0007047

cellular cell wall organization

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0961

P

Seeded from EcoCyc (v14.0)

complete

GO:0008152

metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR001354

P

Seeded from EcoCyc (v14.0)

complete

GO:0009063

cellular amino acid catabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR018110

P

Seeded from EcoCyc (v14.0)

complete

GO:0046872

metal ion binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0479

F

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRLIRRPPRQ QGVKMRTVKV FEEAWPLHTP FVIARGSRSE ARVVVVELEE EGIKGTGECT
PYPRYGESDA SVMAQIMSVV PQLEKGLTRE ELQKILPAGA ARNALDCALW DLAARRQQQS
LADLIGITLP ETVITAQTVV IGTPDQMANS ASTLWQAGAK LLKVKLDNHL ISERMVAIRT
AVPDATLIVD ANESWRAEGL AARCQLLADL GVAMLEQPLP AQDDAALENF IHPLPICADE
SCHTRSNLKA LKGRYEMVNI KLDKTGGLTE ALALATEARA QGFSLMLGCM LCTSRAISAA
LPLVPQVSFA DLDGPTWLAV DVEPALQFTT GELHL
Length

335

Mol. Wt

36.391 kDa

pI

5.4 (calculated)

Extinction coefficient

31,970 - 32,845 (calc based on 3 Y, 5 W, and 7 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

130..222

PF01188 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain

PMID:19920124[5]

Domain

1..112

PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain

PMID:19920124[5]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ycjG taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111249

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946013

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004448

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P51981

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6661

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13228

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946013

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003256

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3018

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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