yciS:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YciS

Synonyms

conserved inner membrane protein[1], B1279[2][1], YciS[2][1] , ECK1274, JW1271, b1279

Product description

conserved inner membrane protein[2][3]

Inner membrane protein, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0997

C

Seeded from EcoCyc (v14.0)

complete

GO:0005886

plasma membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-1003

C

Seeded from EcoCyc (v14.0)

complete

GO:0016020

membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0472

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0812

C

Seeded from EcoCyc (v14.0)

complete

GO:0016021

integral to membrane

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-9909

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

gapA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsR

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsP

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplP

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

eno

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

yfiD

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsJ

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplE

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

fimA

PMID:19402753[5]

LCMS(ID Probability):99.5

Protein

rplJ

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpmG

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpmC

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rpsC

PMID:19402753[5]

MALDI(Z-score):22.383920

Protein

rpsN

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

tufB

PMID:19402753[5]

MALDI(Z-score):23.392908

Protein

hupA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

hns

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplI

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplX

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

ompA

PMID:19402753[5]

MALDI(Z-score):23.915548

Protein

atpA

PMID:19402753[5]

MALDI(Z-score):27.333083

Protein

pgm

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

hemY

PMID:19402753[5]

LCMS(ID Probability):99.6 MALDI(Z-score):39.545073

Protein

ftsH

PMID:19402753[5]

MALDI(Z-score):27.343825

Protein

talB

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

rplD

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

glpD

PMID:19402753[5]

MALDI(Z-score):22.481683

Protein

atpG

PMID:19402753[5]

MALDI(Z-score):25.445700

Protein

rplW

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

putA

PMID:19402753[5]

LCMS(ID Probability):99.6

Protein

qmcA

PMID:19402753[5]

MALDI(Z-score):20.564619

Protein

yhcB

PMID:19402753[5]

MALDI(Z-score):22.077756

Protein

hemX

PMID:19402753[5]

LCMS(ID Probability):99.4 MALDI(Z-score):32.931734

Protein

rplL

PMID:19402753[5]

LCMS(ID Probability):99.6

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

plasma membrane

C-terminus localized in the cytoplasm with 2 predicted transmembrane domains

Daley et al. (2005) [6]


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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MKYLLIFLLV LAIFVISVTL GAQNDQQVTF NYLLAQGEYR ISTLLAVLFA AGFAIGWLIC
GLFWLRVRVS LARAERKIKR LENQLSPATD VAVVPHSSAA KE
Length

102

Mol. Wt

11.351 kDa

pI

10.0 (calculated)

Extinction coefficient

15,470 - 15,595 (calc based on 3 Y, 2 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

10..89

PF06305 Protein of unknown function (DUF1049)

PMID:19920124[7]

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<motif_map/>

tmhmm.php?gene=yciS&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yciS taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129240

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:944936

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004298

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0ACV4

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6637

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13904

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:944936

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003232

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3663

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 5.25 5.26 5.27 5.28 5.29 5.30 5.31 5.32 5.33 5.34 5.35 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  6. ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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