yciQ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YciQ

Synonyms

predicted inner membrane protein[1], YciP[2][1], YciQ[2][1], B1268[2][1] , ECK1262, JW5197, yciP, b1268

Product description

predicted inner membrane protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MAGKFRCILL LIAGLFVSSL SYAENTEIPS YEEGISLFDV EATLQPDGVL DIKENIHFQA
RNQQIKHGFY RDLPRLWMQP DGDAALLNYH IVGVTRDGIP EPWHLDWHIG LMSIVVGDKQ
RFLPQGDYHY QIHYQVKNAF LREGDSDLLI WNVTGNHWPF EIYKTRFSLQ FSNIAGNPFS
EIDLFTGEEG DTYRNGRILE DGRIESRDPF YREDFTVLYR WPHALLSNAS APQTTNIFSH
LLLPSTSSLL IWFPCLFLVC GWLYLWKRRP QFTPVDVIET DVIPPDYTPG MLRLDAKLVY
DDKGFCADIV NLIVKGKIHL EDQSDKNQQI LIRVNEGATR NNAVLLPAEQ LLLEALFRKG
DKVVLTGRRN RVLRRAFLRM QKFYLPRKKS SFYRSDTFLQ WGGLAILAVI LYGNLSPVGW
AGMSLVGDMF IMICWIIPFL FCSLELLFAR DDDKPCVNRV IITLFLPLIC SGVAFYSLYI
NVGDVFFYWY MPAGYFTAVC LTGYLTGMGY IFLPKFTQTG QQRYAHGEAI VNYLARKEAA
THSGRRRKGE TRKLDYALLG WAISANLGRE WALRIAPSLS SAIRAPEIAR NGVLFSLQTH
LSCGANTSLL GRSYSGGGAG GGAGGGGGGG W
Length

631

Mol. Wt

71.292 kDa

pI

8.1 (calculated)

Extinction coefficient

129,720 - 130,970 (calc based on 28 Y, 16 W, and 10 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References

Domain

32..576

PF09972 Predicted membrane protein (DUF2207)

PMID:19920124[5]

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<motif_map/>

tmhmm.php?gene=yciQ&show=pic&.jpg
Click the image to view raw output from TMHMM.

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=yciQ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129229

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945850

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004256

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P45848

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6636

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12969

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945850

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003231

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2797

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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