ychJ:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YchJ

Synonyms

conserved protein[1], B1233[2][1], YchJ[2][1] , ECK1228, JW1221, b1233

Product description

conserved protein[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

insN1

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

ispG

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

rpsI

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

thiI

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

rplE

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

nrdI

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

mngB

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

rplB

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

pyrD

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

minD

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

ybaQ

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

yggR

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

rpsD

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

rpsB

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

fdnG

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

rplA

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

rpsC

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

hns

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

rplD

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

rspA

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

narZ

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

slyD

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

crl

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

hyfR

PMID:16606699[5]

Experiment(s):EBI-1139235

Protein

hyfB

PMID:15690043[6]

Experiment(s):EBI-893845

Protein

hyfB

PMID:19402753[7]

LCMS(ID Probability):99.0

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MSQLCPCGSA VEYSLCCHPY VSGEKVAPDP EHLMRSRYCA FVMQDADYLI KTWHPSCGAA
ALRAELMAGF AHTEWLGLTV FEHCWQDADN IGFVSFVARF TEGGKTGAII ERSRFLKENG
QWYYIDGTRP QFGRNDPCPC GSGKKFKKCC GQ
Length

152

Mol. Wt

16.989 kDa

pI

7.3 (calculated)

Extinction coefficient

30,940 - 32,315 (calc based on 6 Y, 4 W, and 11 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..21

PF02810 SEC-C motif

PMID:19920124[8]

Domain

134..152

PF02810 SEC-C motif

PMID:19920124[8]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ychJ taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129194

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945828

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004140

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P37052

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG12119

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12119

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945828

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002022

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2040

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 5.24 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  7. ↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ 8.0 8.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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