ychH:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YchH

Synonyms

predicted inner membrane protein[1], B1205[2][1], YchH[2][1] , ECK1193, JW1196, b1205

Product description

predicted inner membrane protein[2][3]

Function unknown, putative membrane protein; transcribed divergently from pth[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0044011

single-species biofilm formation on inanimate substrate

PMID:19919618[5]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0070301

cellular response to hydrogen peroxide

PMID:19919618[5]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

GO:0071276

cellular response to cadmium ion

PMID:19919618[5]

IMP: Inferred from Mutant Phenotype

P

Seeded from EcoCyc (v14.0)

complete

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes

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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc

MKRKNASLLG NVLMGLGLVV MVVGVGYSIL NQLPQFNMPQ YFAHGAVLSI FVGAILWLAG
ARVGGHEQVC DRYWWVRHYD KRCRRSDNRR HS
Length

92

Mol. Wt

10.485 kDa

pI

10.8 (calculated)

Extinction coefficient

22,460 - 22,710 (calc based on 4 Y, 3 W, and 2 C residues)


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

1..89

PF10762 Protein of unknown function (DUF2583)

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ychH taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference

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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129168

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945762

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004049

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AB49

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11533

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11533

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945762

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001487

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1495

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. 5.0 5.1 5.2 Lee, J et al. (2010) Identification of stress-related proteins in Escherichia coli using the pollutant cis-dichloroethylene. J. Appl. Microbiol. 108 2088-102 PubMed
  6. Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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