ychA:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YchA

Synonyms

predicted transcriptional regulator[1], B1214[2][1], YchA[2][1] , ECK1202, JW1205, sirB1, b1214

Product description

predicted transcriptional regulator[2][3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
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Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
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Notes

Localization

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Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MRSLADFEFN KAPLCEGMIL ACEAIRRDFP SQDVYDELER LVSLAKEEIS QLLPLEEQLE
KLIALFYGDW GFKASRGVYR LSDALWLDQV LKNRQGSAVS LGAVLLWVAN RLDLPLLPVI
FPTQLILRIE CPDGEIWLIN PFNGESLSEH MLDVWLKGNI SPSAELFYED LDEADNIEVI
RKLLDTLKAS LMEENQMELA LRTSEALLQF NPEDPYEIRD RGLIYAQLDC EHVALNDLSY
FVEQCPEDPI SEMIRAQINN IAHKHIVLH
Length

269

Mol. Wt

30.842 kDa

pI

4.3 (calculated)

Extinction coefficient

37,930 - 38,555 (calc based on 7 Y, 5 W, and 5 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure
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Structures

<beststructure> gene=ychA taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129177

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004074

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0AGM5

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11251

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11251

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945784

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001226

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945784

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1231

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

Categories

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