ycgV:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YcgV

Synonyms

predicted adhesin[1], B1202[2][1], YcgV[2][1] , ECK1190, JW1193, b1202

Product description

putative adhesion and penetration protein[2][3]

Overexpression increases adhesion and biofilm formation; probable adhesin, function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0007155

cell adhesion

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR003991

P

Seeded from EcoCyc (v14.0)

complete

GO:0019867

outer membrane

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR006315

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

adhE

PMID:16606699[5]

Experiment(s):EBI-1139162

Protein

stfR

PMID:16606699[5]

Experiment(s):EBI-1139162
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MGIKQHNGNT KADRLAELKI RSPSIQLIKF GAIGLNAIIF SPLLIAADTG SQYGTNITIN
DGDRITGDTA DPSGNLYGVM TPAGNTPGNI NLGNDVTVNV NDASGYAKGI IIQGKNSSLT
ANRLTVDVVG QTSAIGINLI GDYTHADLGT GSTIKSNDDG IIIGHSSTLT ATQFTIENSN
GIGLTINDYG TSVDLGSGSK ITTDGSTGVY IGGLNGNNAN GAARFTATDL TIDVQGYSAM
GINVQKNSVV DLGTNSTIKT NGDNAHGLWS FGQVSANALT VDVTGAAANG VEVRGGTTTI
GADSHISSAQ GGGLVTSGSD AIINFTGTAA QRNSIFSGGS YGASAQTATA VVNMQNTDIT
VDRNGSLALG LWALSGGRIT GDSLAITGAA GARGIYAMTN SQIDLTSDLV IDMSTPDQMA
IATQHDDGYA ASRINASGRM LINGSVLSKG GLINLDMHPG SVWTGSSLSD NVNGGKLDVA
MNNSVWNVTS NSNLDTLALS HSTVDFASHG STAGTFATLN VENLSGNSTF IMRADVVGEG
NGVNNKGDLL NISGSSAGNH VLAIRNQGSE ATTGNEVLTV VKTTDGAASF SASSQVELGG
YLYDVRKNGT NWELYASGTV PEPTPNPEPT PAPAQPPIVN PDPTPEPAPT PKPTTTADAG
GNYLNVGYLL NYVENRTLMQ RMGDLRNQSK DGNIWLRSYG GSLDSFASGK LSGFDMGYSG
IQFGGDKRLS DVMPLYVGLY IGSTHASPDY SGGDGTARSD YMGMYASYMA QNGFYSDLVI
KASRQKNSFH VLDSQNNGVN ANGTANGMSI SLEAGQRFNL SPTGYGFYIE PQTQLTYSHQ
NEMTMKASNG LNIHLNHYES LLGRASMILG YDITAGNSQL NVYVKTGAIR EFSGDTEYLL
NNSREKYSFK GNGWNNGVGV SAQYNKQHTF YLEADYTQGN LFDQKQVNGG YRFSF
Length

955

Mol. Wt

99.686 kDa

pI

4.9 (calculated)

Extinction coefficient

93,630 (calc based on 37 Y, 7 W, and 0 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

688..942

PF03797 Autotransporter beta-domain

PMID:19920124[6]

Domain

494..616

PF03212 Pertactin

PMID:19920124[6]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ycgV taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129165

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:945767

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004035

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P76017

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6629

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13903

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:945767

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003224

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3662

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  6. ↑ 6.0 6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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