ycgG:Gene Product(s)
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YcgG |
|---|---|
| Synonyms |
conserved inner membrane protein[1], B1168[2][1], YcgG[2][1] , ECK1155, JW5174, b1168 |
| Product description |
conserved protein[2]; conserved inner membrane protein[3] Putative cyclic-di-GMP phosphodiesterase, function unknown[4] |
| EC number (for enzymes) |
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| edit table |
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Notes
Function
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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
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Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
|
plasma membrane |
C-terminus localized in the cytoplasm with 2 predicted transmembrane domains |
Daley et al. (2005) [5] |
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Notes
Structure and Physical Properties
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Physical Properties
See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MAFSCIKPFG RDKQMRNTLI PILVAICLFI TGVAILNIQL WYSAKAEYLA GARYAANNIN HILEEASQAT QTAVNIAGKE CNLEEQYQLG TEAALKPHLR TIIILKQGIV WCTSLPGNRV LLSRIPVFPD SNLLLAPAID TVNRLPILLY QNQFADTRIL VTISDQHIRG ALNVPLKGVR YVLRVADDII GPTGDVMTLN GHYPYTEKVH STKYHFTIIF NPPPLFSFYR LIDKGFGILI FILLIACAAA FLLDRYFNKS ATPEEILRRA INNGEIVPFY QPVVNGREGT LRGVEVLARW KQPHGGYISP AAFIPLAEKS GLIVPLTQSL MNQVARQMNA IASKLPEGFH IGINFSASHI ISPTFVDECL NFRDSFTRRD LNLVLEVTER EPLNVDESLV QRLNILHENG FVIALDDFGT GYSGLSYLHD LHIDYIKIDH SFVGRVNADP ESTRILDCVL DLARKLSISI VAEGVETKEQ LDYLNQNYIT FQQGYYFYKP VTYIDLVKII LSKPKVKVVV E |
| Length |
521 |
| Mol. Wt |
58.517 kDa |
| pI |
7.4 (calculated) |
| Extinction coefficient |
49,280 - 50,155 (calc based on 22 Y, 3 W, and 7 C residues) |
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Domains/Motifs/Modification Sites
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See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
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Structure
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Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
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Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Escherichia coli str. K-12 substr. MG1655 | ||
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Notes
Links
| Name | URL | Comments |
|---|---|---|
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References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Daley, DO et al. (2005) Global topology analysis of the Escherichia coli inner membrane proteome. Science 308 1321-3 PubMed
- ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
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