ycgB:Gene Product(s)

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Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YcgB

Synonyms

conserved protein[1], B1188[2][1], YcgB[2][1] , ECK1176, JW1177, b1188

Product description

conserved protein[2]; putative sporulation protein[3]

Function unknown[4]

EC number (for enzymes)


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Notes

Function

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<protect> Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0006974

response to DNA damage stimulus

PMID:11967071[5]

IEP: Inferred from Expression Pattern

P

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

groL

PMID:16606699[6]

Experiment(s):EBI-1139123

Protein

rplB

PMID:16606699[6]

Experiment(s):EBI-1139123

Protein

uvrY

PMID:16606699[6]

Experiment(s):EBI-1139123

Protein

greB

PMID:16606699[6]

Experiment(s):EBI-1139123
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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<protect> Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MATIDSMNKD TTRLSDGPDW TFDLLDVYLA EIDRVAKLYR LDTYPHQIEV ITSEQMMDAY
SSVGMPINYP HWSFGKKFIE TERLYKHGQQ GLAYEIVINS NPCIAYLMEE NTITMQALVM
AHACYGHNSF FKNNYLFRSW TDASSIVDYL IFARKYITEC EERYGVDEVE RLLDSCHALM
NYGVDRYKRP QKISLQEEKA RQKSREEYLQ SQVNMLWRTL PKREEEKTVA EARRYPSEPQ
ENLLYFMEKN APLLESWQRE ILRIVRKVSQ YFYPQKQTQV MNEGWATFWH YTILNHLYDE
GKVTERFMLE FLHSHTNVVF QPPYNSPWYS GINPYALGFA MFQDIKRICQ SPTEEDKYWF
PDIAGSDWLE TLHFAMRDFK DESFISQFLS PKVMRDFRFF TVLDDDRHNY LEISAIHNEE
GYREIRNRLS SQYNLSNLEP NIQIWNVDLR GDRSLTLRYI PHNRAPLDRG RKEVLKHVHR
LWGFDVMLEQ QNEDGSIELL ERCPPRMGNL
Length

510

Mol. Wt

60.815 kDa

pI

5.9 (calculated)

Extinction coefficient

110,700 - 111,450 (calc based on 30 Y, 12 W, and 6 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

17..453

PF04293 SpoVR like protein

PMID:19920124[7]

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Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=ycgB taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

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Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16129151

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946365

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003990

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P29013

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11516

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11516

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946365

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001471

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1478

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Khil, PP & Camerini-Otero, RD (2002) Over 1000 genes are involved in the DNA damage response of Escherichia coli. Mol. Microbiol. 44 89-105 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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